Detail information of GWHGAAEX012824/evm.TU.scaffold_47.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-58FOG: Predicted E3 ubiquitin ligase
nrgi|672131389|ref|XP_008789253.1|1.66E-114PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Phoenix dactylifera]
Swissprottr|Q9LT17|BBR_ARATH3.00E-75E3 ubiquitin ligase BIG BROTHER-related
trEMBLtr|M0SL81|M0SL81_MUSAM1.00E-106Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P05140_001}
TAIRAT3G199101.00E-58RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000047430114441681+
Transcript Sequence

Network for GWHGAAEX012824

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22342766.30E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms80.370
SRR2545915Juvenile tuber70.270
SRP108465SRR5643513five period of Gastrodia elata55.070
SRR5643514five period of Gastrodia elata50.020
SRR5643515five period of Gastrodia elata50.190
SRR5643524five period of Gastrodia elata49.510
SRR5643525five period of Gastrodia elata53.250
SRR5643528five period of Gastrodia elata46.840
SRR5643658five period of Gastrodia elata62.340
SRR5643659five period of Gastrodia elata69.700
SRR5643660five period of Gastrodia elata77.550
SRR5643661five period of Gastrodia elata51.930
SRR5643662five period of Gastrodia elata54.810
SRR5643663five period of Gastrodia elata63.320
SRR5643664five period of Gastrodia elata73.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.400
SRR6049655Rhizomagastrodiae_C368-T10_good_146.240
SRR6049656Rhizomagastrodiae_C368-T07_good_161.630
SRR6049657Rhizomagastrodiae_C368-T07_good_185.740
SRR6049658Rhizomagastrodiae_C368-T04_good_185.770
SRR6049659Rhizomagastrodiae_C368-T04_good_192.150
SRR6049660Rhizomagastrodiae_C368-T01_good_170.540
SRR6049661Rhizomagastrodiae_C368-T04_good_180.880
SRR6049662Rhizomagastrodiae_C368-T01_good_147.970
SRR6049663Rhizomagastrodiae_C368-T01_good_154.650
SRR6049664Rhizomagastrodiae_C368-T10_good_153.990
SRR6049665Rhizomagastrodiae_C368-T10_good_153.990
SRP279888GastroGastrodia elata tuber 74.12
JuvenJuvenile tuber105.52
Mother_GastroMother tuber of Gastrodia elata 79.24
Mother_JuvenMother tuber of Juvenile 102.56