Detail information of GWHGAAEX012826/evm.TU.scaffold_47.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|72162575|ref|YP_290232.1| | 5.00E-86 | endoglucanase [Thermobifida fusca YX] |
| nr | gi|672159300|ref|XP_008799407.1| | 0 | PREDICTED: endoglucanase 24-like [Phoenix dactylifera] |
| Swissprot | tr|Q69SG5|GUN24_ORYSJ | 0 | Endoglucanase 24 (Precursor) |
| trEMBL | tr|M0U7P5|M0U7P5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP09350_001} |
| TAIR | AT1G75680 | 0 | glycosyl hydrolase 9B7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 477749 | 492972 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012826
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 55 | 511 | 3.60E-135 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.460 |
| SRR2545915 | Juvenile tuber | 19.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.450 |
| SRR5643514 | five period of Gastrodia elata | 44.030 | |
| SRR5643515 | five period of Gastrodia elata | 50.030 | |
| SRR5643524 | five period of Gastrodia elata | 45.940 | |
| SRR5643525 | five period of Gastrodia elata | 36.750 | |
| SRR5643528 | five period of Gastrodia elata | 32.970 | |
| SRR5643658 | five period of Gastrodia elata | 39.270 | |
| SRR5643659 | five period of Gastrodia elata | 70.530 | |
| SRR5643660 | five period of Gastrodia elata | 65.010 | |
| SRR5643661 | five period of Gastrodia elata | 72.710 | |
| SRR5643662 | five period of Gastrodia elata | 53.370 | |
| SRR5643663 | five period of Gastrodia elata | 76.500 | |
| SRR5643664 | five period of Gastrodia elata | 47.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.88 |
| Juven | Juvenile tuber | 30.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.78 | |
| Mother_Juven | Mother tuber of Juvenile | 13.55 |