Detail information of GWHGAAEX012827/evm.TU.scaffold_47.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2577 | 2.00E-69 | Transcription factor E2F/dimerization partner (TDP) |
| nr | gi|672175022|ref|XP_008807580.1| | 3.07E-93 | PREDICTED: transcription factor E2FA-like isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|Q9FV71|E2FB_ARATH | 1.00E-74 | Transcription factor E2FB |
| trEMBL | tr|U5D432|U5D432_AMBTC | 4.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:ERN16172.1} |
| TAIR | AT1G47870 | 2.00E-69 | winged-helix DNA-binding transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 544170 | 579213 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012827
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 150 | 210 | 8.40E-21 |
| PF16421.4 | E2F_CC-MB | 229 | 327 | 2.60E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06620 | E2F3 | Cell cycle | map04110 |
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.190 |
| SRR2545915 | Juvenile tuber | 2.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.550 |
| SRR5643514 | five period of Gastrodia elata | 3.130 | |
| SRR5643515 | five period of Gastrodia elata | 3.190 | |
| SRR5643524 | five period of Gastrodia elata | 2.710 | |
| SRR5643525 | five period of Gastrodia elata | 3.170 | |
| SRR5643528 | five period of Gastrodia elata | 2.860 | |
| SRR5643658 | five period of Gastrodia elata | 2.430 | |
| SRR5643659 | five period of Gastrodia elata | 4.150 | |
| SRR5643660 | five period of Gastrodia elata | 4.050 | |
| SRR5643661 | five period of Gastrodia elata | 4.980 | |
| SRR5643662 | five period of Gastrodia elata | 3.580 | |
| SRR5643663 | five period of Gastrodia elata | 3.810 | |
| SRR5643664 | five period of Gastrodia elata | 3.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.91 |
| Juven | Juvenile tuber | 2.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.47 | |
| Mother_Juven | Mother tuber of Juvenile | 4.60 |