Detail information of GWHGAAEX012830/evm.TU.scaffold_47.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14165.00E-162tRNA(1-methyladenosine) methyltransferase, subunit GCD10
nrgi|672123525|ref|XP_008785125.1|0PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Phoenix dactylifera]
trEMBLtr|A0A067KYJ4|A0A067KYJ4_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP36934.1}
TAIRAT2G457305.00E-162eukaryotic initiation factor 3 gamma subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000047676189713051-
Transcript Sequence

Network for GWHGAAEX012830

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04189.12Gcd10p312947.80E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030488Biological ProcesstRNA methylation
GO:0031515Cellular ComponenttRNA (m1A) methyltransferase complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.060
SRR2545915Juvenile tuber14.700
SRP108465SRR5643513five period of Gastrodia elata9.190
SRR5643514five period of Gastrodia elata9.260
SRR5643515five period of Gastrodia elata9.350
SRR5643524five period of Gastrodia elata9.260
SRR5643525five period of Gastrodia elata5.620
SRR5643528five period of Gastrodia elata5.180
SRR5643658five period of Gastrodia elata6.690
SRR5643659five period of Gastrodia elata11.670
SRR5643660five period of Gastrodia elata12.500
SRR5643661five period of Gastrodia elata11.450
SRR5643662five period of Gastrodia elata9.360
SRR5643663five period of Gastrodia elata10.170
SRR5643664five period of Gastrodia elata9.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.500
SRR6049655Rhizomagastrodiae_C368-T10_good_113.800
SRR6049656Rhizomagastrodiae_C368-T07_good_110.550
SRR6049657Rhizomagastrodiae_C368-T07_good_19.820
SRR6049658Rhizomagastrodiae_C368-T04_good_19.620
SRR6049659Rhizomagastrodiae_C368-T04_good_18.110
SRR6049660Rhizomagastrodiae_C368-T01_good_19.700
SRR6049661Rhizomagastrodiae_C368-T04_good_110.740
SRR6049662Rhizomagastrodiae_C368-T01_good_19.910
SRR6049663Rhizomagastrodiae_C368-T01_good_19.550
SRR6049664Rhizomagastrodiae_C368-T10_good_112.700
SRR6049665Rhizomagastrodiae_C368-T10_good_112.700
SRP279888GastroGastrodia elata tuber 10.55
JuvenJuvenile tuber7.80
Mother_GastroMother tuber of Gastrodia elata 11.03
Mother_JuvenMother tuber of Juvenile 7.26