Gene detail

Detail information of GWHGAAEX012834/evm.TU.scaffold_47.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434406955\|ref\|YP_007149840.1\|	6.00E-59	CDP-diglyceride synthetase [Cylindrospermum stagnale PCC 7417]
KOG	KOG1440	6.00E-146	CDP-diacylglycerol synthase
nr	gi\|720009546\|ref\|XP_010258968.1\|	2.41E-154	PREDICTED: uncharacterized protein LOC104598544 isoform X1 [Nelumbo nucifera]
Swissprot	tr\|O04928\|CDS1_ARATH	3.00E-13	Phosphatidate cytidylyltransferase
trEMBL	tr\|A0A087H5A6\|A0A087H5A6_ARAAL	3.00E-150	Phosphatidate cytidylyltransferase {ECO:0000256\|RuleBase:RU003938}
TAIR	AT2G45150	6.00E-146	cytidinediphosphate diacylglycerol synthase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	907155	941822	-

Transcript Sequence
>GWHTAAEX012834 ATTGGGCTCAAACCAACAGGTTTGGAGAGAGATACTCAAGACAAGTGCCACCGCTCCCTCAAAGACCTATTTTGGTACTGAGGCACACATCCACACCGTGCCCGCAACTACACATGCCTTCTTATCTAGAATACTCGTAACATAAAACATGACCAAATACCTTTACGTCTTAAGATAATTTTGTACCATAATCCCTCCGTTCCTTCTAAGCCTCCAGCGGTTCACAGCCTTCTCAGCCGCAGCTCTCCGGCGAAACGTTTTTCATGGCCGTCACAACAACTCTTCAGCTTCGCCTCTCCATATTATGCCCTCTCTCCTTGTGCCCTTGTCACCAGCGCGCCGCTCCAAACTCCGTCGCATTTGCTCGCCTCTCCTCTGCTTCCCACCTTCCCCGCTTAATCCTACGTACCCGCTGCATTGACGCTGCTTCCGTGTCTTCCGTTGTCTGTGCACATCTGGACTCCCACAAGCGTAATCCCGAGACAATCGAGATGGTGGATGCATTGATTGTTGAACCGAGGAAGCAGAAGCATGGTGGACAACTAAGAAAGAGAGTCTTTTCTGGGCTTGCTATTGGTATTGGTGGGGGCTGTGTCGTGGTGGCTGGAGGATGGGTGTTCACTATTGTTGTGTCTGTTGCTGTGTTTGTTGCTGCTTGTGAATACTTCAATTTGGTGAGAAGCCAAGGGATAGCTTCACGGATGATGCCGCCTCCGATATATGTGTCAAGGGCTTGTTCTGTTTTCTGTGCGTTGATGCCTGTATTGACAACGTACTTTGGTCACAATGATATTTCTACGGCATTATTTGCATTTTTACTGGCGATGGCATTGATTTGCCAAAGAGAAAAGCCACGGTTTTCCCAGCTCAGTAGTACCATGTTTGGATTGTTCTATTGTGCATATCTTCCATGCTTCTGGATTATGTTTCGTTGTGGTCTGTCAGCCCCTATATTGCATACTGATATAGGGAAATATTGGCCAATTCTTCTTGGTGGCCATGCACATTGGACAGTTGGCCTTGTAGCAACCATTATTTCTGTTAGTAGCATAATAGCCGCAGATACATTTGCTTATATTGGGGGAAGGGCATTTGGCCGGACACCATTTACCAGTATCAGTCCGCAGAAGACCTTGGAGGGTGCCTTTGCTGGTTTAATAGGCTGTGTAGCAGTTGCAATTGCTTTGTCTAGAATTTTCGCTTGGCCTTCATCTCATTTAAGTGCTGCAGCTTTTGGAATCTTGAATTTTATTAGTTCTCTCTTTGGAGATCTCGCTGAATCAATGATTAAACGTGATGCTGGCGTTAAAGACTCTGGATCTCTGATACCTGGGCATGGAGGCGTACTTGATAGACTGGATAGTTATATGTTCACAGGTGCAATGTGCTATTCGTTTGTTAAGTTAAGTCTCCCGGCGCTTGGTGTTTGAATTTACCAAAATGCCCCCCCTGCTATGCATGAACTCGCATTACAGATAAATTAAAATGGGAAGAACAAGATGTGTATATAAATTATAGTGCTGCTTTAAGAAGGTAACTATACTCTTAAAACTTCTCCATGCATGCTTGCAGTATTAGTTGGAAACATCCAAAATGGTGATTTTTTACGAGGAATTGTTATTAATCTATCCTGGTATAATAAATCCCATCAAGATTTTAGTTGATAAAGATAAAATGAACAAATAAAATTATTTTTTATATTCATTTAAGCATAAATCCATGTGTGTATGTATTTATGTATGTATGTATGTATGCATGCATGGATGGATGTATGTATGCATGCATGCTTGCATGCATGGATGTATGTATTTATGTATGTCTCCTTTGGGGTGGTTCAATGCTTCTGACAATACTACCCCTATTTTATTAAATTGAGCAACTTAATTTATGGGCTAGATAAGAGTAATTGTGGAAGGTATTAACCCAACATGTTGTTCATTCTTTGTAAATAAGATATATATCATTTTTGTTCTATTATCGG

Network for GWHGAAEX012834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01148.19	CTP_transf_1	96	381	9.50E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00981	E2.7.7.41, CDS1, CDS2, cdsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016772	Molecular Function	transferase activity, transferring phosphorus-containing groups
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.130
SRP064423	SRR2545915	Juvenile tuber	4.920
SRP108465	SRR5643513	five period of Gastrodia elata	5.220
	SRR5643514	five period of Gastrodia elata	5.760
	SRR5643515	five period of Gastrodia elata	6.270
	SRR5643524	five period of Gastrodia elata	4.990
	SRR5643525	five period of Gastrodia elata	8.250
	SRR5643528	five period of Gastrodia elata	8.390
	SRR5643658	five period of Gastrodia elata	7.740
	SRR5643659	five period of Gastrodia elata	6.450
	SRR5643660	five period of Gastrodia elata	6.310
	SRR5643661	five period of Gastrodia elata	6.500
	SRR5643662	five period of Gastrodia elata	6.650
	SRR5643663	five period of Gastrodia elata	6.410
	SRR5643664	five period of Gastrodia elata	5.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.160
SRP279888	Gastro	Gastrodia elata tuber	6.71
	Juven	Juvenile tuber	5.27
	Mother_Gastro	Mother tuber of Gastrodia elata	7.71
	Mother_Juven	Mother tuber of Juvenile	6.03