Gene detail

Detail information of GWHGAAEX012839/evm.TU.scaffold_47.38

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	2.00E-56	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|743854944\|ref\|XP_010941148.1\|	1.80E-128	PREDICTED: trihelix transcription factor GT-2-like [Elaeis guineensis]
Swissprot	tr\|Q39117\|TGT2_ARATH	5.00E-57	Trihelix transcription factor GT-2
trEMBL	tr\|M0S2L9\|M0S2L9_MUSAM	2.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24120_001}
TAIR	AT1G76890	2.00E-56	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	1215990	1220006	-

Transcript Sequence
>GWHTAAEX012839 GTTAAACAAATTGTAAAATAAAAATACTGAGAATAATTTGAATAACTATAGCATTCGCTTTAGATTTTAATGGTTATAATTTATATGAAAAAAAAAGAGAGTAGTCTATAGGGTCGAAGAGCTTTTAGAGTGAAATCAGAGAGCTTAGAAACTGCGAGGTGCGAGCGAGCAGAGACAGAGGCATTAGCTGGCGTCTGAATATTGGACCCCTCCTATTATTTAGGCTAAAAGCATACAGTACCGCCTCATTAAAATCTCCTTGTTTTTTTGCTGGAGAGAGAGAGAGAGCGTGAGAGGAATTCAGTGCTCCCTGGTTGAGTTCAGTGCTTCATGAGTTTATGGTCCCCTACGCTGCGAAGGAGCTTGTGGGGGTTAAGGGGCAAAGCTTTTGATCTCACTGTTCTTAAATCGTTGTATTTTTCTTAGCTAGCTCTCTGAAACTGGCAGCGAAGGAGATAGAAAGACTTCAAAGAAGAGTCGCCCATCTTCTTGTTTGTTTTGAGGTCTCTTTCTCACCAGGACGAGACCATCTGTCTCAACCAAGTAATTGCTGATAGAAAGAGTGAGAGATGGGCAGAGTACTGATGAAGGACACTGGGATATGGTACTGAAGAAGGCAAGAGGAGCCGTGGGGAGAGAAAGAGAGAGAGTTAAATTAAATAAGGCTAGAATCGTAGCATAAGAAGAACCTCCCAATTTGAAGGGATCAGTTTAGCAAGTACAGCAGCCATGGGAAGCTACATCATCTAAAAGAAGCGTTCTCTTAATTTATTGCCGCAGTCCCCACTCAAGAAAAAGGGAATCAATTAAATTCGAGAGACACAGAGATAGCTTCAAAAGTGAAGCGAGCAATGCAATCAAGTTTCGGAGTGTCCGAGATCCAGCAGTTCATGGTGGACGGCTCTGCCCATCCTTTCTTGACTCCGCCGCCTTCCTCCTCCGTCGGACGCGGCAGCCATGAAATTTATCATCCGTCGGTCATAGCCCCGGCAAACAAACTCGTCGGCGCCTTAATCCACAGCCATCCCCAATACGCTCACCCAACCCCATCGCCAGCCCTCTTCCCCCATTTCCACTCCAACATTCCGATCACTCAGCAGCTCTTCACCCCACCGCCGCCGCACCATCCCCATTTCCAGCTTCAGGGAGACGACCACATGCTTCAGGGAGGCGCCACTCCGTCTTCATTCTTCCCTGCCGACTCGAAATTCAAGCATTCGGTCGACCACAGCCCCGGCGGCAGCAGCCGCGATGGATTCAACAGCGACAATGACGTCTGTGAAACCCGATTGCGCTCCTGGCACCGAGAACAGGACTGCTCCATTAAAGAACCCTTTTGGAGGCCCTTAGATTTAGACTACATTAACAGCAACAACAAGCGATGCAAATTGGAGAAGGAACCGCCGGAGCCACTCTTCTCCAAGAGGGGTAAGGCAGCAGCCGCAGGTGAATTGGAAACTGCACATGCCAGCGCGGGAGGAAGCAACTACAAGCTCTTCAGCGAGCTTGAGGCCATCTACAAGCCCGGCGCCACAGACAGAGCCGCCGGCTCCGGCTCAGCCCTCACCGGCGACGAGCACCCCCTCGCGCCCCTCGCCGCCGACCTCGATTCCCACCTCGAAGACAACACGAGCCTCAAGAAATCCCAGCGCCACGGCCGCCGCCGCCGCCGCCGGCAACGGGTGCATCTGGGGTCCATCGCCGCATTCTTCGAAGGGCTACTGAAGCAGCTCATAGACCACCAGGAGGCCCTCCACCAGAAATTTCTGGAAGCGATGGAGCAGCGGGACAGGGAGCGGTGCGGGCAGGAGGAGGCCTGGCGTGAGCAGGAGATGGGCCGTTTGCGCCGGGAGGCCGCCGCGCGGGCTCACGACCGCCAGCTCGCCGCCGCCCGGGAAGCCGCCATCCTCTCCTTCCTCGAGAAGATCACCGGGGAAGCCGTCAGCCTTCCACCCTGCTCTCCCAAAGCCGCCGCCGGCGCCGATTTCGCCTCGGGAGCGATTCCGACGAACCGGTGGCCGAAGGCAGAGGTCCAGGCGCTGATCCAGGTCCGGACCAAGCTGGACGAGCAGTTCCAGGAGCCGGGATTGAAGGGGCCGCTCTGGGAAGAGGTCAGCGCCGCCATGGCGGCCATGGGATACCACCGGAGCGCGAAGCGCTGCAAGGAGAAGTGGGAGAATATCAATAAGTATTTTCGAAAGAGCAGAGATAGCGGCCGTAAGCGTTCGGAGCACTCCAAGACTTGCCCTTACTTTTATCAGCTGGACCAGCTGTACGCGAAGCCCGTCGCAGCCCTCCCGTTGCCGGAGCAGAGCAACTCCGAACTGCTCGATGCTGTCGTCGTCGCAGGAGAGCGGCAAGGCTTGGCCGGAGAGGAGGAAGCCGACGATGACTGCGCGCGATTCGTCGAACAGTTGGAGTGATTGGAATGCGTGCTGCGAGCAGATGATTGTTTATGTTCTAAACTTAATCTGATTTGAACATAAGAAAGATGACGAATGTGTTCGTGGAGGTGTCATCGGCATCCAATATAAGCAACTTCTCGGGGCTTAAAGACGACGACGATGGAGATTCTCATTCGAGAACGAGTTCCGAACTAATCCATTAATGCGAATTGATAGAACCTTCGAATGACCTTTGTCGAAGGTGAACCGATCCCCTTCACAAATCGAACGAGCCGTGAATCATAGGCGATCTTTGCGGGCTTCGTGTGATTCGAAGTCGGGGCTTCGTGCGATGCGATTCCTAGTCGGAGCTTCGAAACGTCAAGGCTTGTGAATCCTCCCGAGGCGCCCGTTCCTCTGCGTAAAACAAAAATTCGCAAGGATTTCGCTTTTTGTTCATGCAAAATGACTGATTTCATAAATTTATTGTAAAAATTTATTCTATCCCCACTTTACCTCATGCAAAACATCACTAAATGTACTTATCATTAGTTTGAATAAAGCTGGCCTCCTTAGCCTTCTAAGCCACTAGTGCTCGGTCCACCACTTTCCAAGGGAAGAATAAAAATCTAGTGAATGCTCTACCGACTAATTTTTCTGTGGCTCCTCTCACTCAAGAAGAGCAAGACTAAGCTGAGTCCTTTCTTTTCAGACACACTGCGGGGATCCATTTTACGTTGACTAAACTTCTGGTGGTCCATCTGTCCATTCTTCATTCCATTGAATCTTTGCAGACACAAAACAGAGCTATGCGATCTTTTTACAAGTAAGAAACATGAGTTTTTTGACAGGGAGAATGATCGTCATAACTTCAATTGCTCAGCAGCGATACATATGGATTAAATGGAATAATGCTAAATAGTTTTTATTATTAGAACAATGGATACTTCGTTAATGTCATTTCTTATTATGGTTGCTAAAAGGTGTTAGTCACGTTCA

Network for GWHGAAEX012839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	387	474	1.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.790
SRP064423	SRR2545915	Juvenile tuber	5.780
SRP108465	SRR5643513	five period of Gastrodia elata	11.100
	SRR5643514	five period of Gastrodia elata	9.190
	SRR5643515	five period of Gastrodia elata	8.660
	SRR5643524	five period of Gastrodia elata	8.520
	SRR5643525	five period of Gastrodia elata	7.690
	SRR5643528	five period of Gastrodia elata	4.040
	SRR5643658	five period of Gastrodia elata	6.180
	SRR5643659	five period of Gastrodia elata	14.170
	SRR5643660	five period of Gastrodia elata	12.310
	SRR5643661	five period of Gastrodia elata	13.180
	SRR5643662	five period of Gastrodia elata	9.550
	SRR5643663	five period of Gastrodia elata	11.030
	SRR5643664	five period of Gastrodia elata	12.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.760
SRP279888	Gastro	Gastrodia elata tuber	10.02
	Juven	Juvenile tuber	9.81
	Mother_Gastro	Mother tuber of Gastrodia elata	1.97
	Mother_Juven	Mother tuber of Juvenile	3.47