Detail information of GWHGAAEX012840/evm.TU.scaffold_47.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32285.00E-97Uncharacterized conserved protein
nrgi|357476859|ref|XP_003608715.1|5.69E-121CWC15-like protein [Medicago truncatula]
trEMBLtr|G7JIW9|G7JIW9_MEDTR2.00E-121Uncharacterized protein {ECO:0000313|EMBL:AFK39559.1}
TAIRAT3G132005.00E-97Cwf15 / Cwc15 cell cycle control family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004712681631285028-
Transcript Sequence

Network for GWHGAAEX012840

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04889.11Cwf_Cwc_1512321.60E-77
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12863CWC15 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms75.260
SRR2545915Juvenile tuber88.590
SRP108465SRR5643513five period of Gastrodia elata108.650
SRR5643514five period of Gastrodia elata115.730
SRR5643515five period of Gastrodia elata107.060
SRR5643524five period of Gastrodia elata109.100
SRR5643525five period of Gastrodia elata117.180
SRR5643528five period of Gastrodia elata107.280
SRR5643658five period of Gastrodia elata105.210
SRR5643659five period of Gastrodia elata120.150
SRR5643660five period of Gastrodia elata125.710
SRR5643661five period of Gastrodia elata127.740
SRR5643662five period of Gastrodia elata122.050
SRR5643663five period of Gastrodia elata117.830
SRR5643664five period of Gastrodia elata133.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_186.020
SRR6049655Rhizomagastrodiae_C368-T10_good_186.020
SRR6049656Rhizomagastrodiae_C368-T07_good_183.240
SRR6049657Rhizomagastrodiae_C368-T07_good_185.730
SRR6049658Rhizomagastrodiae_C368-T04_good_185.090
SRR6049659Rhizomagastrodiae_C368-T04_good_193.940
SRR6049660Rhizomagastrodiae_C368-T01_good_182.790
SRR6049661Rhizomagastrodiae_C368-T04_good_178.620
SRR6049662Rhizomagastrodiae_C368-T01_good_187.420
SRR6049663Rhizomagastrodiae_C368-T01_good_188.990
SRR6049664Rhizomagastrodiae_C368-T10_good_197.710
SRR6049665Rhizomagastrodiae_C368-T10_good_197.710
SRP279888GastroGastrodia elata tuber 100.14
JuvenJuvenile tuber98.32
Mother_GastroMother tuber of Gastrodia elata 101.76
Mother_JuvenMother tuber of Juvenile 89.74