Gene detail

Detail information of GWHGAAEX012841/evm.TU.scaffold_47.40

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	1.00E-35	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|595972646\|ref\|XP_007217659.1\|	0	hypothetical protein PRUPE_ppa000237mg [Prunus persica]
Swissprot	tr\|Q5Z9S8\|PDR12_ORYSJ	0	Pleiotropic drug resistance protein 12
trEMBL	tr\|M5XBG9\|M5XBG9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18858.1}
TAIR	AT3G16340	0	pleiotropic drug resistance 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	1323363	1332402	+

Transcript Sequence
>GWHTAAEX012841 ATGGAGAGGGCCTGGGATTCTGCGCGCCGCGCGAGCCAAAGGCTAGGTGACAGCATCGGGAATAGCGTCTCCGACTGGGGATTTGAGAACGTTTTTGTAAAGGGCGATGCCGGAGATGGAGCCTCCGGCGAGCATGATGACGACGACGTCCTCCGATGGGCGGCCATCCAGCGCCTTCCAACCTACCGCCGCGTTCGCACCGGAATTTTGAAGTCCGCCGTCGCCGGCAGCGGCTCCAGTGAGCAGTACGAGCATCGGGAAGTGGATGTGAGGAAACTTGGTGCGGGGGAGCGGCAGGAGTTCATCCAAAGGGCGCTGAGGGTTGCGGACGAGGATAACGAGAGATTTCTCAAGAAGTTGAGGGATCGGGTCGATAGGGTGGGGATAGAGCTGGCGAAGACGGAGGTTAGGTTTGCCAATCTGACGGTTGAGGCAAATTGCTATGTGGGGAAGAGGGCATTGCCGACTCTGGTGAATGAGGCCAGGAATGCGGCGGAGGCGGCCATTGGGAAGCTTGGCTTTCGGGTGAATCAGACGGCCAAGTTCACGATATTGAAGCAGGTCTCCGGCGTCATCAGACCTTCCAGGATGACGCTTTTGTTGGGTCCTCCGTCTTCAGGAAAGACAACACTGATGCTTGCTCTTGCAGGAAAATTAGATCCAAATCTAAAGATGACTGGCGAGATCACATATAATGGGCATAAGCTGAATGAATTTGTGCCTCAGAAGACGGCAGCATACATCAGCCAGCATGACCTGCACTTGGGAGAGTTGACAGTAAAGGAGACGCTCGACTTCTCTGCCCGTTGCCAAGGCGTTGGCTCTCGTTATGAACTTGTGACAGAGTTGGCGAAGAGGGAGAAGCAGGCAGGCATTAAACCTGATCCTGAGATAGACCTCTTTATGAAGGCCGTTGCAATGGAAGGAGCAAAAGGCAACCTCCAAACAGATTACATCCTCAAGTTATTGGGACTAGATATTTGCGCGGACACGATGATCGGAGACGCCATGCACAGAGGAATTTCCGGCGGTCAGAAGAAGCGTGTTACAACAGGTGAGATGATCGTGGGGCCGACGCGGACGGTCCTGATGGACGAGATATCGACGGGGTTGGACAGCTCGACGACCTTTCAGATCGTAAAATGCGTCCGGCAGAGCGTGCATCTGGTCGGCGCAACGATCCTGATGGCCCTACTGCAGCCCTCCCCGGAGACCTTCGACCTCTTCGACGACGTCATCGTCCTCAGCAACGGCAACGTCGTCTTCCACGGCCCCCGAGAGCTGGCCCTCCCCTTCTTCGCCTCCTGCGGCTTCGTCTGCCCCGCCCGCAAGCCTCCCGCAGACTTTCTCCAGGAAGTCACCTCCTCCAAGGACCAGCCCCAGTACTGGTCCCACCCCTTCCGATCCTACGCCTTCGTCCCCCCCTCCGAGCTCGCCCGCCTCTTCCGCCTCTCTCCCTCCGGCCAGCATCTCGCCTCCTCCCTCTCCGCCTCCTTCGACCGCGCTCAGTCCCACCCCGCAGCCCTCGTCAGATCCCGCCGCCCCGTCTCCTGCTCCGCCCTTCTTCGCGCTTCCTTCGCCAAGGAATTCCTCCTCATCCACCGCAACTCCGTCATCTACGTTTCCAAGTCGTCGCTGATGCTCATCAAGGCGATCGTGGTCGGGACGATCTTTTTCCGGACGGAGATGCGGGAGGACACTCTCGAAGACGGAATGCTCTACATCGGCGCGCTGCTCTTTGGCCTCATTGTCAATATGTTTAATGGCTTCTCCGAGCTCTCCGTCACCATGACCAGGCTGCCTGTCTTTTTCAAGCAGCGGAATCTTCTCTTCTTCCCGCCTTGGGTCTTCACCGTCCCATATTCTCTTCTCAGAATCCCCATCTCGGTGTTCGAATCCGCCGTCTGGGTCCTGGTGACCTACGTCCTCATTGGCTTTGCCCCCGAGGTTAGCAGATTCTTCAAGCAGCTGCTTTTAGCCTTCTCGATGCAGCAGATGGCTGCGAGTCTTTTCAGGTTGATCGCAGGGGTCTGCAGATCTATTGTAATCTCCAATACTGGAGGATCGCTCATGATTTTTGCACTGTTTATTACTGGAGGTTTCATTCTTCCAAAAGATTTGATCCCAAAATGGTGGATGTGGTCTCATTGGATCTCTCCTTTGACATATGGGTACAATGCTATTGCGATCAATGAATTCTTTGCTAAAAGATGGATGAGCAAAGTCTTGCCTGGTGGGAAAAGCTTAGGTGTGGCTGTGCTAGAGAATTGTGGTGTTTTCCCAGAAGAAAAATGGTACTGGATTGGGATTGCTGTTATTTTAAGCTTTTCCATTCTTTTCAATATGCTCTTTACTCTTGCAATAACTTATCTTAATCGTAAGTTTTGGGTTTTACCTTTGTTAAGCTTGTCATTGAAGTATTTCTTTAAATGTTCTAATGATTTTCCGCATTCGCATTACAACGAAGTTGCTTCCAAGAAAGGAATGGTTCTACCATTCATACCTTTAACTATGTCTTTTGACGAAGTAAACTATTATGTTGATATGCCTTCGGAAATGAGGAATCAAGGTGTGACTGAAGATCGACTCCAACTGTTGATGGGGGTTACAGGAAGTTTCAGGCCTGGAGTTTTGACTGCCCTTATGGGAGTTAGTGGAGCAGGAAAGACAACCCTTATGGATGTTCTGGCAGGAAGAAAAACTGGTGGTTATATCGAAGGTGACATAAGAGTATCTGGTTATCCCAATAATCAATCTACTTTTGCAAGAATCTCGGGATACTGTGAGCAGAATGATATCCACTCTCCTCAGGTCACTGTATATGAGTCATTGATTTATTCTGCTTTCCTTCGTCTTCTTAATAATGTCAGCAGAAAAGAAAAGCTGAAATTCGTGGATGAAGTGATGGATCTTGTAGAGCTTGGCAACCTCAAGGATGCCATTGTCGGTCTTCCAGGAGTTACAGGGTTGTCAACCGAGCAACGAAAGAGGTTAACAGTTGCAGTAGAGCTTGTTGCTAATCCTTCTATTGTATTCATGGATGAACCGACATCAGGCCTCGATGCAAGGGCTGCAGCCATTGTCATGAGAACCATAAGGAACACAGTTGACACTGGACGAACTGTTGTGTGTACTATTCATCAACCGAGCATCAATATATTTGAAGCCTTTGATGAATTGTTATTGATGAAAAGAGGAGGCCAAGTGGCATACTTTGGGCCGTTAGGCCAACACTCAGAGACGCTGATTAAATACTTTGAGTCTGTTCCTGGAGTTCCAAAAATCAATGATAAATACAATCCTGCAACATGGGTACTAGAAGTGACTTCCTTTGCCTTTGAATCACGATTGGAAATCGACTTTGCTGCTGTCTATAAAGAATCTGAACTTTTCAAGAAGAATAGGGCCGCAATCAATAAGCTGAAAAAGCCAGTTGCAGGAGCCAGTGACCTCTGCTTTCCAACTAAATACTCTCAATCTAGCTACGACCAGTTCAAAACGTGTTTCTGGAAGCAGTGGTGGACCTACTGGAGGAGCCCTGATTATAACTTGGTTCGATTTTTTTTCACCTTCTTCACAGCTGTTCTCCTGGGCTCCGTCTTCTGGAGAATTGGAAATAAGAGGGATAATGCAAATGATCTCCATATCGTCATTGGTTCTATGTATGTTGCTGTTATGTTCGTTGGTGTTAATAACTGCTCAACTGTTCAACCGGTTGTTGCCATTGAGAGGTCAGTATATTATCGCGAAAGAGCTGCAGGGATGTATTCTGCTTTGCCGTATGCACTTGCTCAGGTGCTTGTGGAAATACCGTATGTATTTATCCAAAGTATTCAGTATTCACTTATAGTGTACTCGATGATGAACTTCCAATGGACAGCTGCGAAGTTTGCATGGTTTTACTTCATCTCTTTCTTCTCATTCCTGTACTTCACATACTATGGAATGATGACCGTATCAGTAACGCCAAATCAGCAAGTTGCAGCTATCTTGGCTTCGACCTTCTATTCAATCTTTAATCTTTTTTCAGGCTTCTTCATTCCCCGGCCGAAAATTCCCAAATGGTGGGTTTGGTACTATTGGATTTGCCCTTTGGCGTGGACGGTTTATGGCCTCATCACAACGCAGTATGGCGATCTTGAGGACATGATTCAAGTGCCTGGGCGTGCTGATCAGTCTATAAAAGCTTATATCATGGATTTTTATGGCTTTCGATCAGACTTTATGAGCATCGTTGCTGCAGTACTAGTGGGCTTCTGCGTCTTATTCGCGTTCATATTTGCGTTTTGCATCAAGAAATTGAACTTCCAGCAGCGATAGAAGAGAAGCAGAGGTGCTGCATTTTTCTGATACTTATCTATCTACAGCCAGTTTTATTGCATTCTTATTCATACAGATGACAAGGCATCTATTCATTCATTCATATTATTCGTGTATCATAATGTAGCGAATTTTTAGGGCCTTTGAGAAATTATTATTATTTTTGAATTTGTAGAATAAATCATGAGACAAAGCAGATAGAAGTTTTGTGAATAATAAGCTTACCTTGTATATTATTTTGCACATGATCCTTCACAAACAATACA

Network for GWHGAAEX012841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	100	159	7.60E-13
PF00005.26	ABC_tran	185	367	4.40E-14
PF01061.23	ABC2_membrane	522	733	9.30E-37
PF08370.10	PDR_assoc	738	792	9.80E-20
PF00005.26	ABC_tran	868	1018	4.00E-18
PF01061.23	ABC2_membrane	1164	1377	2.00E-58

Protein Sequence

>GWHPAAEX012841
MERAWDSARRASQRLGDSIGNSVSDWGFENVFVKGDAGDGASGEHDDDDVLRWAAIQRLPTYRRVRTGILKSAVAGSGSSEQYEHREVDVRKLGAGERQEFIQRALRVADEDNERFLKKLRDRVDRVGIELAKTEVRFANLTVEANCYVGKRALPTLVNEARNAAEAAIGKLGFRVNQTAKFTILKQVSGVIRPSRMTLLLGPPSSGKTTLMLALAGKLDPNLKMTGEITYNGHKLNEFVPQKTAAYISQHDLHLGELTVKETLDFSARCQGVGSRYELVTELAKREKQAGIKPDPEIDLFMKAVAMEGAKGNLQTDYILKLLGLDICADTMIGDAMHRGISGGQKKRVTTGEMIVGPTRTVLMDEISTGLDSSTTFQIVKCVRQSVHLVGATILMALLQPSPETFDLFDDVIVLSNGNVVFHGPRELALPFFASCGFVCPARKPPADFLQEVTSSKDQPQYWSHPFRSYAFVPPSELARLFRLSPSGQHLASSLSASFDRAQSHPAALVRSRRPVSCSALLRASFAKEFLLIHRNSVIYVSKSSLMLIKAIVVGTIFFRTEMREDTLEDGMLYIGALLFGLIVNMFNGFSELSVTMTRLPVFFKQRNLLFFPPWVFTVPYSLLRIPISVFESAVWVLVTYVLIGFAPEVSRFFKQLLLAFSMQQMAASLFRLIAGVCRSIVISNTGGSLMIFALFITGGFILPKDLIPKWWMWSHWISPLTYGYNAIAINEFFAKRWMSKVLPGGKSLGVAVLENCGVFPEEKWYWIGIAVILSFSILFNMLFTLAITYLNRKFWVLPLLSLSLKYFFKCSNDFPHSHYNEVASKKGMVLPFIPLTMSFDEVNYYVDMPSEMRNQGVTEDRLQLLMGVTGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRVSGYPNNQSTFARISGYCEQNDIHSPQVTVYESLIYSAFLRLLNNVSRKEKLKFVDEVMDLVELGNLKDAIVGLPGVTGLSTEQRKRLTVAVELVANPSIVFMDEPTSGLDARAAAIVMRTIRNTVDTGRTVVCTIHQPSINIFEAFDELLLMKRGGQVAYFGPLGQHSETLIKYFESVPGVPKINDKYNPATWVLEVTSFAFESRLEIDFAAVYKESELFKKNRAAINKLKKPVAGASDLCFPTKYSQSSYDQFKTCFWKQWWTYWRSPDYNLVRFFFTFFTAVLLGSVFWRIGNKRDNANDLHIVIGSMYVAVMFVGVNNCSTVQPVVAIERSVYYRERAAGMYSALPYALAQVLVEIPYVFIQSIQYSLIVYSMMNFQWTAAKFAWFYFISFFSFLYFTYYGMMTVSVTPNQQVAAILASTFYSIFNLFSGFFIPRPKIPKWWVWYYWICPLAWTVYGLITTQYGDLEDMIQVPGRADQSIKAYIMDFYGFRSDFMSIVAAVLVGFCVLFAFIFAFCIKKLNFQQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.250
SRP064423	SRR2545915	Juvenile tuber	0.570
SRP108465	SRR5643513	five period of Gastrodia elata	0.710
	SRR5643514	five period of Gastrodia elata	0.800
	SRR5643515	five period of Gastrodia elata	0.760
	SRR5643524	five period of Gastrodia elata	0.610
	SRR5643525	five period of Gastrodia elata	2.560
	SRR5643528	five period of Gastrodia elata	1.830
	SRR5643658	five period of Gastrodia elata	1.680
	SRR5643659	five period of Gastrodia elata	0.650
	SRR5643660	five period of Gastrodia elata	0.400
	SRR5643661	five period of Gastrodia elata	0.320
	SRR5643662	five period of Gastrodia elata	0.480
	SRR5643663	five period of Gastrodia elata	0.740
	SRR5643664	five period of Gastrodia elata	0.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.070
SRP279888	Gastro	Gastrodia elata tuber	1.14
	Juven	Juvenile tuber	0.62
	Mother_Gastro	Mother tuber of Gastrodia elata	3.61
	Mother_Juven	Mother tuber of Juvenile	2.57