Detail information of GWHGAAEX012842/evm.TU.scaffold_47.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332685997|ref|YP_004455771.1| | 3.00E-66 | polygalacturonase [Melissococcus plutonius ATCC 35311] |
| nr | gi|695017021|ref|XP_009395434.1| | 0 | PREDICTED: probable polygalacturonase isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 0 | Probable polygalacturonase |
| trEMBL | tr|C5Z263|C5Z263_SORBI | 0 | Putative uncharacterized protein Sb10g000660 {ECO:0000313|EMBL:EER89047.1} |
| TAIR | AT3G61490 | 0 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 1396780 | 1400039 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012842
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 139 | 422 | 9.30E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.260 |
| SRR2545915 | Juvenile tuber | 2.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.930 |
| SRR5643514 | five period of Gastrodia elata | 13.090 | |
| SRR5643515 | five period of Gastrodia elata | 3.740 | |
| SRR5643524 | five period of Gastrodia elata | 2.970 | |
| SRR5643525 | five period of Gastrodia elata | 46.540 | |
| SRR5643528 | five period of Gastrodia elata | 28.760 | |
| SRR5643658 | five period of Gastrodia elata | 105.360 | |
| SRR5643659 | five period of Gastrodia elata | 1.080 | |
| SRR5643660 | five period of Gastrodia elata | 0.240 | |
| SRR5643661 | five period of Gastrodia elata | 0.210 | |
| SRR5643662 | five period of Gastrodia elata | 0.510 | |
| SRR5643663 | five period of Gastrodia elata | 0.600 | |
| SRR5643664 | five period of Gastrodia elata | 0.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.42 |
| Juven | Juvenile tuber | 3.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.41 |