Detail information of GWHGAAEX012846/evm.TU.scaffold_47.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186686361|ref|YP_001869557.1| | 7.00E-36 | O-methyltransferase family protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG3178 | 8.00E-134 | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases |
| nr | gi|89113193|gb|ABD61228.1| | 3.61E-169 | O-methyltransferase-3 [Vanilla planifolia] |
| Swissprot | tr|Q8W013|COMT1_CATRO | 7.00E-146 | Caffeic acid 3-O-methyltransferase |
| trEMBL | tr|Q27I62|Q27I62_VANPL | 1.00E-169 | O-methyltransferase-3 {ECO:0000313|EMBL:ABD61228.1} |
| TAIR | AT5G54160 | 8.00E-134 | O-methyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 1661960 | 1663944 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012846
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08100.10 | Dimerisation | 32 | 83 | 1.40E-10 |
| PF00891.17 | Methyltransf_2 | 127 | 348 | 1.40E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13066 | E2.1.1.68, COMT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008171 | Molecular Function | O-methyltransferase activity |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 462.510 |
| SRR2545915 | Juvenile tuber | 172.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 196.780 |
| SRR5643514 | five period of Gastrodia elata | 106.080 | |
| SRR5643515 | five period of Gastrodia elata | 574.750 | |
| SRR5643524 | five period of Gastrodia elata | 431.180 | |
| SRR5643525 | five period of Gastrodia elata | 185.560 | |
| SRR5643528 | five period of Gastrodia elata | 2491.210 | |
| SRR5643658 | five period of Gastrodia elata | 265.700 | |
| SRR5643659 | five period of Gastrodia elata | 475.720 | |
| SRR5643660 | five period of Gastrodia elata | 314.940 | |
| SRR5643661 | five period of Gastrodia elata | 481.990 | |
| SRR5643662 | five period of Gastrodia elata | 550.010 | |
| SRR5643663 | five period of Gastrodia elata | 218.770 | |
| SRR5643664 | five period of Gastrodia elata | 225.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 114.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 67.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 88.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.26 |
| Juven | Juvenile tuber | 24.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,315.93 | |
| Mother_Juven | Mother tuber of Juvenile | 735.83 |