Detail information of GWHGAAEX012850/evm.TU.scaffold_47.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158337976|ref|YP_001519152.1| | 1.00E-16 | cellulose synthase catalytic subunit [Acaryochloris marina MBIC11017] |
| nr | gi|743853999|ref|XP_010940784.1| | 0 | PREDICTED: cellulose synthase-like protein D2 [Elaeis guineensis] |
| Swissprot | tr|A2YU42|CSLD2_ORYSI | 0 | Cellulose synthase-like protein D2 |
| trEMBL | tr|K7K5F4|K7K5F4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44281.1} |
| TAIR | AT3G03050 | 0 | cellulose synthase-like D3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 1836717 | 1842903 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012850
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14570.5 | zf-RING_4 | 143 | 191 | 6.10E-14 |
| PF03552.13 | Cellulose_synt | 383 | 1142 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Carbohydrate-Active enzymes Family | GT2 |
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.800 |
| SRR2545915 | Juvenile tuber | 8.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.120 |
| SRR5643514 | five period of Gastrodia elata | 12.760 | |
| SRR5643515 | five period of Gastrodia elata | 15.210 | |
| SRR5643524 | five period of Gastrodia elata | 14.100 | |
| SRR5643525 | five period of Gastrodia elata | 13.410 | |
| SRR5643528 | five period of Gastrodia elata | 21.580 | |
| SRR5643658 | five period of Gastrodia elata | 22.660 | |
| SRR5643659 | five period of Gastrodia elata | 16.510 | |
| SRR5643660 | five period of Gastrodia elata | 13.820 | |
| SRR5643661 | five period of Gastrodia elata | 13.880 | |
| SRR5643662 | five period of Gastrodia elata | 13.240 | |
| SRR5643663 | five period of Gastrodia elata | 15.810 | |
| SRR5643664 | five period of Gastrodia elata | 13.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.49 |
| Juven | Juvenile tuber | 16.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.41 | |
| Mother_Juven | Mother tuber of Juvenile | 10.87 |