Detail information of GWHGAAEX012851/evm.TU.scaffold_47.59


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743779176|ref|XP_010920053.1|4.10E-49PREDICTED: uncharacterized protein LOC105043989 [Elaeis guineensis]
trEMBLtr|M0SVE7|M0SVE7_MUSAM3.00E-4550S ribosomal protein L35 {ECO:0000256|RuleBase:RU000568}
TAIRAT5G455908.00E-23Ribosomal protein L35

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004718584611879358-
Transcript Sequence

Network for GWHGAAEX012851

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01632.18Ribosomal_L35p951547.80E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.750
SRR2545915Juvenile tuber15.900
SRP108465SRR5643513five period of Gastrodia elata18.970
SRR5643514five period of Gastrodia elata22.290
SRR5643515five period of Gastrodia elata13.740
SRR5643524five period of Gastrodia elata15.360
SRR5643525five period of Gastrodia elata10.710
SRR5643528five period of Gastrodia elata7.480
SRR5643658five period of Gastrodia elata7.150
SRR5643659five period of Gastrodia elata14.130
SRR5643660five period of Gastrodia elata12.430
SRR5643661five period of Gastrodia elata12.140
SRR5643662five period of Gastrodia elata11.690
SRR5643663five period of Gastrodia elata10.310
SRR5643664five period of Gastrodia elata10.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.740
SRR6049655Rhizomagastrodiae_C368-T10_good_127.060
SRR6049656Rhizomagastrodiae_C368-T07_good_128.470
SRR6049657Rhizomagastrodiae_C368-T07_good_115.060
SRR6049658Rhizomagastrodiae_C368-T04_good_115.690
SRR6049659Rhizomagastrodiae_C368-T04_good_113.650
SRR6049660Rhizomagastrodiae_C368-T01_good_115.470
SRR6049661Rhizomagastrodiae_C368-T04_good_119.380
SRR6049662Rhizomagastrodiae_C368-T01_good_125.620
SRR6049663Rhizomagastrodiae_C368-T01_good_123.540
SRR6049664Rhizomagastrodiae_C368-T10_good_136.240
SRR6049665Rhizomagastrodiae_C368-T10_good_136.240
SRP279888GastroGastrodia elata tuber 13.86
JuvenJuvenile tuber11.68
Mother_GastroMother tuber of Gastrodia elata 9.43
Mother_JuvenMother tuber of Juvenile 8.08