Detail information of GWHGAAEX012853/evm.TU.scaffold_47.61


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-145FOG: PPR repeat
nrgi|672130348|ref|XP_008788703.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Phoenix dactylifera]
Swissprottr|Q8GZA6|PP113_ARATH2.00E-145Pentatricopeptide repeat-containing protein At1g71210
trEMBLtr|F2EKW8|F2EKW8_HORVD0Predicted protein {ECO:0000313|EMBL:BAK07990.1}
TAIRAT1G712103.00E-145Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004719455471952984+
Transcript Sequence

Network for GWHGAAEX012853

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR2062340.074
PF01535.19PPR3784060.013
PF01535.19PPR4474750.00031
PF13812.5PPR_36256671.90E-06
PF13041.5PPR_26947386.30E-11
PF13041.5PPR_28388862.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.620
SRR2545915Juvenile tuber7.970
SRP108465SRR5643513five period of Gastrodia elata7.640
SRR5643514five period of Gastrodia elata5.600
SRR5643515five period of Gastrodia elata6.580
SRR5643524five period of Gastrodia elata5.840
SRR5643525five period of Gastrodia elata8.090
SRR5643528five period of Gastrodia elata5.240
SRR5643658five period of Gastrodia elata6.240
SRR5643659five period of Gastrodia elata10.100
SRR5643660five period of Gastrodia elata10.340
SRR5643661five period of Gastrodia elata9.640
SRR5643662five period of Gastrodia elata10.990
SRR5643663five period of Gastrodia elata9.790
SRR5643664five period of Gastrodia elata8.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.400
SRR6049655Rhizomagastrodiae_C368-T10_good_19.950
SRR6049656Rhizomagastrodiae_C368-T07_good_17.950
SRR6049657Rhizomagastrodiae_C368-T07_good_17.610
SRR6049658Rhizomagastrodiae_C368-T04_good_17.170
SRR6049659Rhizomagastrodiae_C368-T04_good_17.750
SRR6049660Rhizomagastrodiae_C368-T01_good_17.690
SRR6049661Rhizomagastrodiae_C368-T04_good_17.720
SRR6049662Rhizomagastrodiae_C368-T01_good_16.790
SRR6049663Rhizomagastrodiae_C368-T01_good_16.910
SRR6049664Rhizomagastrodiae_C368-T10_good_17.190
SRR6049665Rhizomagastrodiae_C368-T10_good_17.190
SRP279888GastroGastrodia elata tuber 8.56
JuvenJuvenile tuber9.82
Mother_GastroMother tuber of Gastrodia elata 6.65
Mother_JuvenMother tuber of Juvenile 10.10