Detail information of GWHGAAEX012854/evm.TU.scaffold_47.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317055635|ref|YP_004104102.1| | 3.00E-07 | NUDIX hydrolase [Ruminococcus albus 7] |
| KOG | KOG2937 | 7.00E-126 | Decapping enzyme complex, predicted pyrophosphatase DCP2 |
| nr | gi|743825224|ref|XP_010932981.1| | 0 | PREDICTED: mRNA-decapping enzyme subunit 2 [Elaeis guineensis] |
| Swissprot | tr|Q8GW31|DCP2_ARATH | 1.00E-139 | mRNA-decapping enzyme subunit 2 |
| trEMBL | tr|M0RXC0|M0RXC0_MUSAM | 4.00E-177 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05620_001} |
| TAIR | AT5G13570 | 7.00E-126 | decapping 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 1954061 | 2030369 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012854
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05026.12 | DCP2 | 22 | 104 | 3.80E-29 |
| PF00293.27 | NUDIX | 110 | 221 | 7.90E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12613 | DCP2 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0030145 | Molecular Function | manganese ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.280 |
| SRR2545915 | Juvenile tuber | 32.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.610 |
| SRR5643514 | five period of Gastrodia elata | 20.260 | |
| SRR5643515 | five period of Gastrodia elata | 20.380 | |
| SRR5643524 | five period of Gastrodia elata | 19.280 | |
| SRR5643525 | five period of Gastrodia elata | 28.700 | |
| SRR5643528 | five period of Gastrodia elata | 23.640 | |
| SRR5643658 | five period of Gastrodia elata | 29.580 | |
| SRR5643659 | five period of Gastrodia elata | 20.400 | |
| SRR5643660 | five period of Gastrodia elata | 20.390 | |
| SRR5643661 | five period of Gastrodia elata | 18.590 | |
| SRR5643662 | five period of Gastrodia elata | 21.660 | |
| SRR5643663 | five period of Gastrodia elata | 21.540 | |
| SRR5643664 | five period of Gastrodia elata | 20.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.93 |
| Juven | Juvenile tuber | 30.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.01 | |
| Mother_Juven | Mother tuber of Juvenile | 26.34 |