Detail information of GWHGAAEX012857/evm.TU.scaffold_47.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743830848|ref|XP_010934525.1| | 0 | PREDICTED: auxin response factor 11 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8S983|ARFK_ORYSJ | 0 | Auxin response factor 11 |
| trEMBL | tr|A0A061FD42|A0A061FD42_THECC | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT1G19850 | 0 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 2184729 | 2240484 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012857
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 202 | 303 | 1.70E-20 |
| PF06507.12 | Auxin_resp | 328 | 410 | 3.40E-32 |
| PF02309.15 | AUX_IAA | 943 | 1040 | 3.40E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14486 | K14486, ARF | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.790 |
| SRR2545915 | Juvenile tuber | 4.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.930 |
| SRR5643514 | five period of Gastrodia elata | 3.430 | |
| SRR5643515 | five period of Gastrodia elata | 2.290 | |
| SRR5643524 | five period of Gastrodia elata | 2.160 | |
| SRR5643525 | five period of Gastrodia elata | 4.100 | |
| SRR5643528 | five period of Gastrodia elata | 10.640 | |
| SRR5643658 | five period of Gastrodia elata | 10.580 | |
| SRR5643659 | five period of Gastrodia elata | 1.820 | |
| SRR5643660 | five period of Gastrodia elata | 2.100 | |
| SRR5643661 | five period of Gastrodia elata | 2.590 | |
| SRR5643662 | five period of Gastrodia elata | 5.880 | |
| SRR5643663 | five period of Gastrodia elata | 7.800 | |
| SRR5643664 | five period of Gastrodia elata | 5.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.65 |
| Juven | Juvenile tuber | 3.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.50 | |
| Mother_Juven | Mother tuber of Juvenile | 2.21 |