Detail information of GWHGAAEX012860/evm.TU.scaffold_47.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307592008|ref|YP_003899599.1| | 3.00E-172 | phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [Cyanothece sp. PCC 7822] |
| KOG | KOG1220 | 0 | Phosphoglucomutase/phosphomannomutase |
| nr | gi|731412538|ref|XP_010658400.1| | 0 | PREDICTED: uncharacterized protein LOC100244432 isoform X2 [Vitis vinifera] |
| trEMBL | tr|D7TM87|D7TM87_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI31454.3} |
| TAIR | AT5G17530 | 0 | phosphoglucosamine mutase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 2357624 | 2416426 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012860
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02878.15 | PGM_PMM_I | 92 | 239 | 1.70E-27 |
| PF02879.15 | PGM_PMM_II | 268 | 373 | 1.20E-19 |
| PF02880.15 | PGM_PMM_III | 379 | 481 | 1.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071704 | Biological Process | organic substance metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016868 | Molecular Function | intramolecular transferase activity, phosphotransferases |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.890 |
| SRR2545915 | Juvenile tuber | 24.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.460 |
| SRR5643514 | five period of Gastrodia elata | 18.710 | |
| SRR5643515 | five period of Gastrodia elata | 16.650 | |
| SRR5643524 | five period of Gastrodia elata | 15.810 | |
| SRR5643525 | five period of Gastrodia elata | 24.290 | |
| SRR5643528 | five period of Gastrodia elata | 20.860 | |
| SRR5643658 | five period of Gastrodia elata | 21.510 | |
| SRR5643659 | five period of Gastrodia elata | 19.280 | |
| SRR5643660 | five period of Gastrodia elata | 24.330 | |
| SRR5643661 | five period of Gastrodia elata | 19.930 | |
| SRR5643662 | five period of Gastrodia elata | 17.230 | |
| SRR5643663 | five period of Gastrodia elata | 19.240 | |
| SRR5643664 | five period of Gastrodia elata | 18.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.37 |
| Juven | Juvenile tuber | 14.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.97 | |
| Mother_Juven | Mother tuber of Juvenile | 11.76 |