Detail information of GWHGAAEX012865/evm.TU.scaffold_47.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|91772264|ref|YP_564956.1|8.00E-43proteasome subunit alpha [Methanococcoides burtonii DSM 6242]
KOGKOG01846.00E-16420S proteasome, regulatory subunit alpha type PSMA3/PRE10
nrgi|657381497|gb|KEH25483.1|5.87E-16820S proteasome subunit alpha [Medicago truncatula]
Swissprottr|Q9LSU0|PSA3_ORYSJ7.00E-170Proteasome subunit alpha type-3
trEMBLtr|A0A072U8Q5|A0A072U8Q5_MEDTR2.00E-168Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT2G270206.00E-16420S proteasome alpha subunit G1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004725552212576460-
Transcript Sequence

Network for GWHGAAEX012865

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N8301.70E-13
PF00227.25Proteasome332164.80E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02727PSMA3 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms115.460
SRR2545915Juvenile tuber151.410
SRP108465SRR5643513five period of Gastrodia elata174.080
SRR5643514five period of Gastrodia elata205.130
SRR5643515five period of Gastrodia elata168.280
SRR5643524five period of Gastrodia elata183.650
SRR5643525five period of Gastrodia elata126.470
SRR5643528five period of Gastrodia elata136.500
SRR5643658five period of Gastrodia elata130.800
SRR5643659five period of Gastrodia elata177.210
SRR5643660five period of Gastrodia elata177.170
SRR5643661five period of Gastrodia elata178.890
SRR5643662five period of Gastrodia elata182.710
SRR5643663five period of Gastrodia elata178.250
SRR5643664five period of Gastrodia elata179.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1170.330
SRR6049655Rhizomagastrodiae_C368-T10_good_1150.250
SRR6049656Rhizomagastrodiae_C368-T07_good_1172.870
SRR6049657Rhizomagastrodiae_C368-T07_good_1151.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1136.010
SRR6049659Rhizomagastrodiae_C368-T04_good_1125.980
SRR6049660Rhizomagastrodiae_C368-T01_good_1142.410
SRR6049661Rhizomagastrodiae_C368-T04_good_1133.650
SRR6049662Rhizomagastrodiae_C368-T01_good_1186.510
SRR6049663Rhizomagastrodiae_C368-T01_good_1162.130
SRR6049664Rhizomagastrodiae_C368-T10_good_1226.610
SRR6049665Rhizomagastrodiae_C368-T10_good_1226.610
SRP279888GastroGastrodia elata tuber 166.90
JuvenJuvenile tuber225.91
Mother_GastroMother tuber of Gastrodia elata 118.04
Mother_JuvenMother tuber of Juvenile 157.23