Detail information of GWHGAAEX012867/evm.TU.scaffold_47.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|41615325|ref|NP_963823.1| | 5.00E-30 | DNA topoisomerase VI subunit A [Nanoarchaeum equitans Kin4-M] |
| KOG | KOG2795 | 2.00E-127 | Catalytic subunit of the meiotic double strand break transesterase |
| nr | gi|743854952|ref|XP_010941153.1| | 7.27E-153 | PREDICTED: meiotic recombination protein SPO11-2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6ZD95|SPO12_ORYSJ | 6.00E-142 | Meiotic recombination protein SPO11-2 |
| trEMBL | tr|W5I179|W5I179_WHEAT | 2.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DL_866535B0E.2} |
| TAIR | AT1G63990 | 2.00E-127 | sporulation 11-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000047 | 2686612 | 2719986 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012867
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04406.13 | TP6A_N | 129 | 194 | 1.60E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10878 | SPO11 | Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006259 | Biological Process | DNA metabolic process |
| GO:0000737 | Biological Process | DNA catabolic process, endonucleolytic |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0016889 | Molecular Function | endodeoxyribonuclease activity, producing 3'-phosphomonoesters |
| GO:0005694 | Cellular Component | chromosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.720 |
| SRR2545915 | Juvenile tuber | 2.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.470 |
| SRR5643514 | five period of Gastrodia elata | 0.700 | |
| SRR5643515 | five period of Gastrodia elata | 1.020 | |
| SRR5643524 | five period of Gastrodia elata | 0.900 | |
| SRR5643525 | five period of Gastrodia elata | 1.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.320 | |
| SRR5643658 | five period of Gastrodia elata | 1.430 | |
| SRR5643659 | five period of Gastrodia elata | 0.130 | |
| SRR5643660 | five period of Gastrodia elata | 0.420 | |
| SRR5643661 | five period of Gastrodia elata | 0.420 | |
| SRR5643662 | five period of Gastrodia elata | 0.420 | |
| SRR5643663 | five period of Gastrodia elata | 0.210 | |
| SRR5643664 | five period of Gastrodia elata | 0.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.41 |
| Juven | Juvenile tuber | 0.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.70 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |