Gene detail

Detail information of GWHGAAEX012869/evm.TU.scaffold_47.76

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-97	FOG: PPR repeat
nr	gi\|743830741\|ref\|XP_010934502.1\|	1.08E-160	PREDICTED: pentatricopeptide repeat-containing protein At4g14190, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|O23278\|PP310_ARATH	2.00E-102	Pentatricopeptide repeat-containing protein At4g14190, chloroplastic (Precursor)
trEMBL	tr\|M0TFH9\|M0TFH9_MUSAM	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P07390_001}
TAIR	AT4G14190	1.00E-97	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	2737044	2741384	+

Transcript Sequence
>GWHTAAEX012869 CCACATTCAAAACATTTGAAGTAATGGAGAATCGAAATGCACGAACTCCTCCTTTTCCTGGAATCAAAGAGCACTATGGAAATCCTCAGAGCTCAAACGCTTGATACCATTTTCGGCGGTCGCTTCACCTTGCAATCTCTTATCAAGTACCGTATCCCGGTCTCTCTTTCGCCCCTGTCCACCCAAAATCGGGTCCCCTCTTCCCCTCCTCTTCGGCTCCTCTTAGCCGGAAACTGGACTCACTCTGCGGTCGACACCTTCCATCATAAAGGAAGCCGCAAGACCTTGCTGGATGAGTTTTCCAGCAGCCTCTCCGGGGATGGAGATTGGCCCTTCGAAAATCTCCTGGACGTTCTCACCATCCTTATCGATGCCGGAAAGGCGACTGAGGCCCTTCAGGTTTTTCATCTGTGGAAGAGCAAAGAAAAATCACGAGCTACTGTTGTTAACTATTCCGATGTCATTAGATTATTTTGCGAAAAGAATCTGATAGATACTGCAATGCTGATATTTCAAGATATGGAGAAATTTGGGGTTGCTCCATCTCTCGCAATTTACAATGTCTTAATTCATGGATTTGCTCAAATTAATGAATTTCACAAATCTAGGGCCCTTTTAACAAAAATGATCGATGGTGGTTTATCCCCAGTTATGAAAACCTATCATGGGCTCATTCAAGCTTATGGAAATCACCATCTCTATGATGATATGAACAAGTGTGTGAAGATGATGGAATCAGCTGGATGTCATCCAAATGAGCTCACTTACAATATATTGATTCAGGAGTTTTCTCGTGCCGGACTTCTAGAGAAGATGGAGAAATTTTATAGAGTTATACTTTCTAAAAAAATGAGGCTGCAATCTTCCACTCTGATTGCCATGGTTGAAGCCTATGCAGACTTGGGAGTTTTAGATAAGATGGAGAAAATGTATTACAAAGTTTTGTATTCAAACACTATTTTGAAGGATGATCTCATCAGGAAAGTGGCCAGTGTGTACATTGAACACTGTAGATTTGGTCGGTTAGAAGAGCTTGGAAATGAAATTGGTGGAAAAACTGGTAGAAATGAACTTGTTTGGTGCATTCTCCTCCTTTCGTCTGCTGGTTTTTTGAACCGACAGGGCATGGACTCTATTTCAAGAGAAATAAAATTTGCAAAAGTAAGACCGAGCACAACATTCACCAATATTTTTGCGTTATTCTATCTAAAGATCAAAGATTTCAAGGCTTTAAATGGCGTTTTCTTAGATGCTTTGAATCGCAGGGTAGAACCTGACATGTTAACTGTTGCTATTGTTTTTGATGCATGCTCTATTGGGTGTGATTGCTCCTATGTATTAGAAAAATGGAAAAGATGTGCTTACCTTGAAGCAACTGCTGAAATGAGAACTGATCCTCTGGTTATTTCTGCTTTTGGGAAAGGTCCTTTCTTGTTAAAGTGTGAGAAGATTTACACCTCTCTCGGATCCAAAGCTGCCAATGAGAAGAAAATTTGGAAATATACTGATCTATTTAGATTGGTTTTATCCTGGCAAGATGATGAGGATCTGCAAAATTTATGCGGTGATAGGTAAATGGTGAATGAAAGTATTATATAATTTGGCTGACTTCTCTTGGAAGAATGGGGATAGATATCCTCGTTAGCAGAAATATTGAGATTGCTATGGATAATCAGTGCAAAATTTTTTCTTGGGCTACTAAATCTTCCTGTTAGGAGTCTATTTTGCTATATGTACCATATGTATGCTTCACAATTTCTATAGTTATGAGTTTATTTTGTTGAAAGCTTCATTCATGCTCATATGATTTGCACCATCACATGATGCTCATTCAGTTTATATTATTGTGCTAAATAGAATTTCAGGGCTTTGATTATTTGCAGTTTATTTACAGTTTCTTGGTATTTTCTGTTTCATCCCATTCACTCAGTAACAGAGAAAATGTTGCTTTTTATGCTCAAGTATGGAAGTAATCTAAGTGTAGAAGTATGGAATGCATGAAAAAGTGTGCTTGACATTGATCATTTTCTTAACTCTAGCTGTTAGCATAAAAACTGATTCATGGGATACATTTGGGTCCTCTTTGTATATTACAG

Network for GWHGAAEX012869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17177.3	PPR_long	116	268	6.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.640
SRP064423	SRR2545915	Juvenile tuber	0.900
SRP108465	SRR5643513	five period of Gastrodia elata	3.480
	SRR5643514	five period of Gastrodia elata	4.660
	SRR5643515	five period of Gastrodia elata	3.380
	SRR5643524	five period of Gastrodia elata	3.100
	SRR5643525	five period of Gastrodia elata	11.770
	SRR5643528	five period of Gastrodia elata	10.140
	SRR5643658	five period of Gastrodia elata	28.450
	SRR5643659	five period of Gastrodia elata	3.640
	SRR5643660	five period of Gastrodia elata	3.730
	SRR5643661	five period of Gastrodia elata	4.680
	SRR5643662	five period of Gastrodia elata	2.560
	SRR5643663	five period of Gastrodia elata	4.230
	SRR5643664	five period of Gastrodia elata	2.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.380
SRP279888	Gastro	Gastrodia elata tuber	3.91
	Juven	Juvenile tuber	2.17
	Mother_Gastro	Mother tuber of Gastrodia elata	3.77
	Mother_Juven	Mother tuber of Juvenile	2.30