Gene detail

Detail information of GWHGAAEX012871/evm.TU.scaffold_47.81

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302338615\|ref\|YP_003803821.1\|	3.00E-13	winged helix family two component transcriptional regulator [Spirochaeta smaragdinae DSM 11293]
KOG	KOG1601	1.00E-56	GATA-4/5/6 transcription factors
nr	gi\|743885428\|ref\|XP_010909920.1\|	3.63E-128	PREDICTED: two-component response regulator-like PRR95 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q689G6\|PRR95_ORYSJ	7.00E-111	Two-component response regulator-like PRR95
trEMBL	tr\|M0U335\|M0U335_MUSAM	3.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P24280_001}
TAIR	AT5G24470	1.00E-56	pseudo-response regulator 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	2788654	2828136	+

Transcript Sequence
>GWHTAAEX012871 ATGTGCGTGGGCTGCCCGCCTGTCGTCCTTAGGGCGATAGGCACGGGGCCCTCTCCTATGCGCTGTCGGCCTCTAGGGCCGGCACGTGTTGGCTCTGCTGTCGTCTTCATGGTCCCCATCCAGAACCAAAATATCTACTGCACTGCAGCTCCTGTCCGGATATCTCCTCCGTGGCCCTGCTGGCGCCACGTCGATGCGGGACCCCGTCAGACCAATGTTTGTGCATCTACCGGATTTGTCGACGTGGCATCCGCTGCTCCTCTAAGAGCCGAAAAAGATATGCCCATTGGGAGATTTTTTTCTGGACTGAAGAAGTGCCCGCTCTTCTGTGCGCGCATGTTGTTCGACGGAATGTCCAAAAAGACTGGTATGGGTTTTGACGAGGAGAAGGCGGAATGGGAGAAGCTGCTGCTTAGGGCGCCTTTGAGTGTGCTTCTAGTCGAGGGAGACGATTCTACAAGGCAGATCATTATTGCCCTGTTGCACAAGTGCGGTTATAGAGTTACGGTAGCATCTGATGGATTAAAGGCATGGGAGATACTGAGGGAGAAAGGTCATAATATTGACCTTGTTCTTACAGAGGTTGAATTACCTAAAATGTCTGGATTTGTTCTTTTAACCATGATGATGTCTCATGACATCTGCAAGAACCTTCCTGCCATAATGATGTCTTCAAACGATTCTATCAGCCTAGCTTTTAAATGCATGATAAATGGTGCATCAGATTTCCTTGTGAAGCCCATCAGGAAGAACGAACTAACGAATATCTGGCAGCATGTTTGGAGAAAACATAAGCATCAGGGTGAAAGCCGCACAATCCCGAATAAAATGGACTTGGATTATGATTGTCGTTCAAATGAAAATGCTTCGGATAAGCATGATATGGATCGCTGCGAAAAAGAAAGTGATGCTCAAAGCTCTTGCACAAGGTCTGATTTAGAAGTTGAAAGTATATGCAAGCTAAGCAACAAGATGGAGCATAAACAAGAACAACTTATTAATTTATCTCTTTTTGATAACACAATAAAGGCTGATAATCATTTTAGCAAACAGTTGGATGCAATGTCATTATTTCCAAATGATGAAGCAAATGGAGCTATATCATTTACCACTGATATGCAACCAGAAGGAAATGCTAATTGCCAAAAACTATGCCAGAATGAATTTTATGCAGAAGTATATGATATGATTAATGTACTTCATGATCAATCACCACAGCATATTTCTAGTTCTGAAAACTCTCGAGACAATTTGGCCAAAAATCTTCTAGTTGATTTAAACTTGGACAAGGAAATGAATTTCATACCTTCACTTGAACTCTCTTTGGATAGATCTCCGCAGATTCTGGCCAATAGACAAGAGGATGACGAGTCTAATACGTTGCATCATTCATATTCCTCAGCATTTTCACAGTACAGTAACAGCTGGAAGGTAGTTCCTAAATTGTCACAAGAAATTATTTTTCAAGCTCAAAGCAAGAAAAGTTCTAGTAGCTCTGTTGAATCCCCATATTATCAATCTTCTGCCACACCTCTGCATTATAATGGCTTAATTTCAGAACTTATTGATACCGGCTTCATGAATGCTGCATTTTCCCAGAAGCAAAATGCCTCATTTAGTTGCTTTCCAATACAGTTTATCCCCTTCCCTATTCCTGCGGGAGGCATGAGCTTTAATCCCACTGCATCTAATTCCTTCATTCAGCCCATGTTCTATCCACAATCAGCTTCTTCTTTCTGGAGCCCGATTCCATCTTTCATGCAGGAAAATTTTACTGAAAATCCTGAATATCAGGATGATGATCCTAGGAAGGAAGAAGAAGCTGAGCTAGCTGATGAACAAAAGCATGTTTCATCTGAAGATGGGCGTAACACTGATAACAAATGTAGTGTTAATGAGAATGGAGCAGCTGTCGCTTGTACAGAAAGCAATAGTCCTGTATCCTTTGCCAAATCTGGAGCTGATGCATCCCCTTTGAGCCATAGAGAAGCAGCATTGAACAAATTTCGTTTGAAGAGAAAGGAAAGATGTTTTGAGAAAAAGGTTCGCTACGTAAGCAGGAAAAAGCTAGCTGAGCAACGTCCTAGAGTAAAGGGACAATTTATTCGTCAACGGTAAAATAATTAAAACTCTAATCTTCCTATTGTATAGACAGATCTGATGCCATTAACATTATCAGTATTGCTAAAAATTAAAAAGATCAGGTTCCCAAAAAAAAGATGTTGGAGTATTAGCATCCCCACTGACAATACGCTGTTTATATATTGTACTTAATTTCATCTTCTGTTGAAGGGATACTAATAGTTAGGATATTTTTTTTGTGTCATTGATGAAATTTGACTATTTTAGTGTTGTTTCTATAGCAAAAGGCTTGTTTTCTTTTTGATGTTTTCTATGTATTTTAAATACAAAGAGCTCTAGAAGTTATCTTCCGATCTATGAAACAAAGGGATGGAGTAAAGAAGCTAGCATTTCATTTTCTGAGAGAGAAACAATGATCTTTTGAGGCAAAGGTGATGAGGTTTATATTGTAATTGTTAGTTTTCTTCATGAAAGGGTTTTGCTATGTAATAGATTCTCTATCTCTTTCTCTTGCTAAATTTGATAAAAAGTTTATCATAATTATTGATAAATTTTTGAAAATATGAAAACACTGA

Network for GWHGAAEX012871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.23	Response_reg	144	255	1.70E-20
PF06203.13	CCT	662	704	7.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12130	PRR5	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.080
SRP064423	SRR2545915	Juvenile tuber	27.860
SRP108465	SRR5643513	five period of Gastrodia elata	4.030
	SRR5643514	five period of Gastrodia elata	4.070
	SRR5643515	five period of Gastrodia elata	3.750
	SRR5643524	five period of Gastrodia elata	2.820
	SRR5643525	five period of Gastrodia elata	10.380
	SRR5643528	five period of Gastrodia elata	4.410
	SRR5643658	five period of Gastrodia elata	6.240
	SRR5643659	five period of Gastrodia elata	19.520
	SRR5643660	five period of Gastrodia elata	21.230
	SRR5643661	five period of Gastrodia elata	25.930
	SRR5643662	five period of Gastrodia elata	19.740
	SRR5643663	five period of Gastrodia elata	27.460
	SRR5643664	five period of Gastrodia elata	31.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.840
SRP279888	Gastro	Gastrodia elata tuber	35.26
	Juven	Juvenile tuber	15.66
	Mother_Gastro	Mother tuber of Gastrodia elata	9.23
	Mother_Juven	Mother tuber of Juvenile	6.39