Detail information of GWHGAAEX012878/evm.TU.scaffold_47.93


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-114FOG: PPR repeat
nrgi|672137405|ref|XP_008792429.1|5.43E-162PREDICTED: pentatricopeptide repeat-containing protein At5g43790 [Phoenix dactylifera]
Swissprottr|Q9FG85|PP415_ARATH5.00E-115Pentatricopeptide repeat-containing protein At5g43790
trEMBLtr|K4CJ43|K4CJ43_SOLLC4.00E-130Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g014100.1.1}
TAIRAT5G437902.00E-114Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004731478623149556-
Transcript Sequence

Network for GWHGAAEX012878

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR831020.94
PF01535.19PPR2863140.0075
PF01535.19PPR3213470.044
PF01535.19PPR3573770.28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.710
SRR2545915Juvenile tuber0.510
SRP108465SRR5643513five period of Gastrodia elata1.940
SRR5643514five period of Gastrodia elata2.350
SRR5643515five period of Gastrodia elata1.420
SRR5643524five period of Gastrodia elata1.480
SRR5643525five period of Gastrodia elata0.710
SRR5643528five period of Gastrodia elata0.580
SRR5643658five period of Gastrodia elata0.320
SRR5643659five period of Gastrodia elata2.570
SRR5643660five period of Gastrodia elata2.660
SRR5643661five period of Gastrodia elata3.610
SRR5643662five period of Gastrodia elata3.030
SRR5643663five period of Gastrodia elata2.500
SRR5643664five period of Gastrodia elata3.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.710
SRR6049655Rhizomagastrodiae_C368-T10_good_12.070
SRR6049656Rhizomagastrodiae_C368-T07_good_11.790
SRR6049657Rhizomagastrodiae_C368-T07_good_11.840
SRR6049658Rhizomagastrodiae_C368-T04_good_11.580
SRR6049659Rhizomagastrodiae_C368-T04_good_12.120
SRR6049660Rhizomagastrodiae_C368-T01_good_11.760
SRR6049661Rhizomagastrodiae_C368-T04_good_11.030
SRR6049662Rhizomagastrodiae_C368-T01_good_12.390
SRR6049663Rhizomagastrodiae_C368-T01_good_11.460
SRR6049664Rhizomagastrodiae_C368-T10_good_12.440
SRR6049665Rhizomagastrodiae_C368-T10_good_12.440
SRP279888GastroGastrodia elata tuber 2.40
JuvenJuvenile tuber1.98
Mother_GastroMother tuber of Gastrodia elata 1.78
Mother_JuvenMother tuber of Juvenile 1.34