Detail information of GWHGAAEX012890/evm.TU.scaffold_47.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33911.00E-58Transcriptional co-repressor component
nrgi|743830371|ref|XP_010934405.1|5.36E-82PREDICTED: histone deacetylase complex subunit SAP18 [Elaeis guineensis]
Swissprottr|O64644|SAP18_ARATH4.00E-59Histone deacetylase complex subunit SAP18
trEMBLtr|M0SE23|M0SE23_MUSAM2.00E-80Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P12560_001}
TAIRAT2G456401.00E-58SIN3 associated polypeptide P18

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004734431233469812-
Transcript Sequence

Network for GWHGAAEX012890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06487.11SAP18351546.70E-41
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14324SAP18 RNA transport map03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.820
SRR2545915Juvenile tuber52.230
SRP108465SRR5643513five period of Gastrodia elata61.210
SRR5643514five period of Gastrodia elata82.440
SRR5643515five period of Gastrodia elata59.770
SRR5643524five period of Gastrodia elata66.420
SRR5643525five period of Gastrodia elata56.710
SRR5643528five period of Gastrodia elata56.590
SRR5643658five period of Gastrodia elata50.430
SRR5643659five period of Gastrodia elata71.470
SRR5643660five period of Gastrodia elata73.130
SRR5643661five period of Gastrodia elata80.350
SRR5643662five period of Gastrodia elata88.180
SRR5643663five period of Gastrodia elata78.170
SRR5643664five period of Gastrodia elata80.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.670
SRR6049655Rhizomagastrodiae_C368-T10_good_198.150
SRR6049656Rhizomagastrodiae_C368-T07_good_156.170
SRR6049657Rhizomagastrodiae_C368-T07_good_139.440
SRR6049658Rhizomagastrodiae_C368-T04_good_150.400
SRR6049659Rhizomagastrodiae_C368-T04_good_141.320
SRR6049660Rhizomagastrodiae_C368-T01_good_145.590
SRR6049661Rhizomagastrodiae_C368-T04_good_144.530
SRR6049662Rhizomagastrodiae_C368-T01_good_174.550
SRR6049663Rhizomagastrodiae_C368-T01_good_164.740
SRR6049664Rhizomagastrodiae_C368-T10_good_191.490
SRR6049665Rhizomagastrodiae_C368-T10_good_191.490
SRP279888GastroGastrodia elata tuber 67.64
JuvenJuvenile tuber35.26
Mother_GastroMother tuber of Gastrodia elata 35.32
Mother_JuvenMother tuber of Juvenile 22.78