Detail information of GWHGAAEX012892/evm.TU.scaffold_47.113


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42114.00E-89Splicing factor hnRNP-F and related RNA-binding proteins
nrgi|743851723|ref|XP_010940214.1|5.47E-154PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform X1 [Elaeis guineensis]
trEMBLtr|Q2RAY1|Q2RAY1_ORYSJ2.00E-142cDNA clone:001-014-D07, full insert sequence {ECO:0000313|EMBL:BAG86669.1}
TAIRAT5G660104.00E-89RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004739561183974040+
Transcript Sequence

Network for GWHGAAEX012892

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1971627.90E-07
PF00076.21RRM_12172833.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.880
SRR2545915Juvenile tuber53.890
SRP108465SRR5643513five period of Gastrodia elata66.340
SRR5643514five period of Gastrodia elata62.980
SRR5643515five period of Gastrodia elata61.840
SRR5643524five period of Gastrodia elata58.130
SRR5643525five period of Gastrodia elata56.660
SRR5643528five period of Gastrodia elata63.300
SRR5643658five period of Gastrodia elata49.560
SRR5643659five period of Gastrodia elata83.800
SRR5643660five period of Gastrodia elata94.860
SRR5643661five period of Gastrodia elata87.930
SRR5643662five period of Gastrodia elata81.780
SRR5643663five period of Gastrodia elata78.640
SRR5643664five period of Gastrodia elata89.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.190
SRR6049655Rhizomagastrodiae_C368-T10_good_164.740
SRR6049656Rhizomagastrodiae_C368-T07_good_187.680
SRR6049657Rhizomagastrodiae_C368-T07_good_187.490
SRR6049658Rhizomagastrodiae_C368-T04_good_189.290
SRR6049659Rhizomagastrodiae_C368-T04_good_180.220
SRR6049660Rhizomagastrodiae_C368-T01_good_181.130
SRR6049661Rhizomagastrodiae_C368-T04_good_176.600
SRR6049662Rhizomagastrodiae_C368-T01_good_192.770
SRR6049663Rhizomagastrodiae_C368-T01_good_190.780
SRR6049664Rhizomagastrodiae_C368-T10_good_197.670
SRR6049665Rhizomagastrodiae_C368-T10_good_197.670
SRP279888GastroGastrodia elata tuber 128.99
JuvenJuvenile tuber90.50
Mother_GastroMother tuber of Gastrodia elata 83.81
Mother_JuvenMother tuber of Juvenile 73.11