Gene detail

Detail information of GWHGAAEX012893/evm.TU.scaffold_47.115

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0955	2.00E-94	PHD finger protein BR140/LIN-49
nr	gi\|672157058\|ref\|XP_008798221.1\|	1.37E-157	PREDICTED: bromodomain-containing protein DDB_G0270170-like [Phoenix dactylifera]
Swissprot	tr\|Q93ZB7\|GTE11_ARATH	8.00E-14	Transcription factor GTE11
trEMBL	tr\|M0RNG6\|M0RNG6_MUSAM	5.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01360_001}
TAIR	AT1G20670	2.00E-94	DNA-binding bromodomain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	4016960	4031750	+

Transcript Sequence
>GWHTAAEX012893 AGAGAGAGAGAGAGAGAAAGAGAGGGAGAGAGAGAGAGAGATAGAGGTGAGGGAGAAAGGAGATGGGCAAGCCAGTAGAGAAGAAGAGGAAGAAGAAAGGCCGCCCCTCTCTCCTCGATCTCCAGAAGCGAAGCCTCCGCCTTCAGAAACAGAAAGATCAGCAACAGTATGAGCAGCAAGAGCAGAAGCGAAACCCTAACCCTAGTTCCAATCCCTATGCCCGCTTCCCTAATCCCCCTCCAGTTCGCCTCCCCCGCCGAAACCGTAGCCCCGACCCTGAACCGCGATCGCTTGAAGAGGAAATCGATGATGCGTCTGAGGCTGCCTCTGCTGAAGAGGATGAAGACCATGAGATGCCCTCCGAGAAGAGAAAGGCGAAGAAGCTCAAGCTCGTTGTCCAGCTTCCTCACCAGGACGCCAATTCTTCCGATGCTCTGTGCTTGGTATCTGAATCGGACGGCCCGGCTATCAACAAGCGGAAGATCGACACTGCTGGAAAGGCAGAAAGTAAACATTCCTCCTGGAAAGCGACAGAAGCTCCTCAAGATTGGGGCCCCACTACACCTCTTCCTGACAAAAAGTTATTGGAGTTCATCCTTGATAGACTTCAGAAGAAGGACACATATGGAGTTTTTTCAGAGCCTGTAGATCCCAACGAGCTTCCAGATTATCATGACATCATTAAACATCCGATGGATTTTGGGACTGTACGGGAGAGACTTTTAAGTGGAGCTTATAGGAATTTGGAGCAGTTTGAGAGAGATGTTTTCTTAATAAGCTTAAATGCTATGCGCTACAATGCACCGGACACAATTTACTTTAGGCAGGCACGCTCAATCCATGAGCTGGCTAAAAAAAATTTCGAAAATCTAAGGCAAGAGAGCGATGATAATGATCCTGAGCCTGAGCCTGAGCCTGAACCCGAGCCAGAGCGTGAGCCAGAGCTTGAGCCTGAGCCAAAAAGAGTACGCAGAGGTCGACCTCCTGGCAGCGGAAAGAACAATACCAAGCGGCCAGTTGGCATATCTCCTGCAGAGCGTGCTGGCTCTGAATTCTTTTTGGAAGCGTCCCTTGCTAATGCTTCAAATGGCAACATTTCTACAAGCCCAATGAATGATTTTATTAGAAGAGGATCAGGAGTTCATAGGCCTTCTGTGGTAGATGCATCATCCAAGGCTTTCAACTGTGTTCAGGGTTCTGATTCTTATATTTTAAACAATGAGCTTAAATCAGAGAAAAGAGAAGATTATTCAGGGAGCATTTGCAAAGGGTTCTCAAAATGTGGAAAGAAACTTCCAGCTACAGATGAGACTTCGCGAGATATATGCAAGCAACACCAGTTGGCAACTTTTGAGTTGCCTGTGTTGACAGCTCCTGTAGGAGAGAGAAAGAATTTGGTGCCTGTCGGGCTTCATGTCGAGTATGCATATGCAAGAAGCCTCGTTCGTTTCGCAGCGAATCTTGGTCCCATTGGATGGAAACTGGCCGCCAAACGGATAGAGAAGGCGCTCCCTCCTGGCACTAGATTTGGTCCTGGGTGGATTGAGGAGCGACCGCTGATCTCACTGCCCTCCATCCATCCTTCTTCATCCCTGCCAAATGCCTCGATGACATCATGGTGTGACCAATTCTCGGAAAGGCACAAGGATATCCCTTCCAATAAAGTTGCAGAACAAGAGCGCCACTTCAGGACTTCTCCATCTTCGGTTTCTGCATCTGCTGCAGCTCCAGATGCACTCTCCGATGCCAACGAGGGGAAAGTTTTACCCCACTTTCGTCAGTTCGCAATGCTGCAACCTCCTGCGAATGGGTTCAAAACTCCTTTCGTTCCTTTACTGCATCGACAAGGAAAGTTTGCCTCGCCAAATGTCTCTCCAAGCAACTTTGGTTTATAGGCACTAATGGCTGTAATAAATCTCATGCAGTCTTAGAGGCAAACTGTCATAATGGATCGTATCATACTCTTGGAGAGGGAGAGGGTTGCTGAACCCACGCCAGAGCGGAAATTGATCAATTTCTAGCCTGACCTCTTATTCCTTTCAAGGAAGATTCACAGCAGCAGATTTAGCATCCGAGTTGCTGAAGGAAATTTAGTATATGGAATTAAGGGTTCAATAATGATATATTTGTCCGGTTTCACATCTCCTAAACCTATTTGGCACCTGAGTTTTGGCAGATTGAGGGGGAGATTGTTTTTTTCTCGGAAATTAAGGAACTCTAATGCCTCTAACCTCTCGGCTATCACTGGCTTCAGGGCTCCCTATGAGCTAGGTATCATTCTTATTGCTTTAGAAGTATATCATTCATCCTAGCTTTATAGAAGCTGCAAGGCATGGTTTCGGGTGAGGTTTAATTTTTTGTAATATTTGAATGATTTAATACTTTAGAAAATATTAGTAGAATCGAGGTTTCAATTTTGTACAGATTATTTGATGTACACACCAGTGAAATGAAGTAGTGAGTTGTTTTCTTTTAGCATTGGATACCCAAATTCTTTTGTATTAGAGTTGGTTAGCTGTGTAACATTGTCTTTATTCTCAGTTTCTTGCAGTGCTGATCGTTTGCTCATGCTTCTGATAGTCGTTATGTTTGGGGTTTTAGTCTATATATATGCATGTTATATACATTTAACACATTTCATCTTCTATATCAT

Network for GWHGAAEX012893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	176	257	6.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.780
SRP064423	SRR2545915	Juvenile tuber	16.900
SRP108465	SRR5643513	five period of Gastrodia elata	15.930
	SRR5643514	five period of Gastrodia elata	13.740
	SRR5643515	five period of Gastrodia elata	14.400
	SRR5643524	five period of Gastrodia elata	14.090
	SRR5643525	five period of Gastrodia elata	21.430
	SRR5643528	five period of Gastrodia elata	17.270
	SRR5643658	five period of Gastrodia elata	17.260
	SRR5643659	five period of Gastrodia elata	20.330
	SRR5643660	five period of Gastrodia elata	21.750
	SRR5643661	five period of Gastrodia elata	19.670
	SRR5643662	five period of Gastrodia elata	20.180
	SRR5643663	five period of Gastrodia elata	19.060
	SRR5643664	five period of Gastrodia elata	22.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.440
SRP279888	Gastro	Gastrodia elata tuber	28.64
	Juven	Juvenile tuber	23.24
	Mother_Gastro	Mother tuber of Gastrodia elata	25.48
	Mother_Juven	Mother tuber of Juvenile	34.53