Gene detail

Detail information of GWHGAAEX012894/evm.TU.scaffold_47.117

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337750288\|ref\|YP_004644450.1\|	2.00E-121	protein FadA [Paenibacillus mucilaginosus KNP414]
KOG	KOG1389	0	3-oxoacyl CoA thiolase
nr	gi\|645493221\|gb\|AIB06952.1\|	0	3-ketoacyl-CoA thiolase [Vanda hybrid cultivar]
Swissprot	tr\|Q56WD9\|THIK2_ARATH	0	3-ketoacyl-CoA thiolase 2, peroxisomal (Precursor)
trEMBL	tr\|A0A075E3G4\|A0A075E3G4_9ASPA	0	3-ketoacyl-CoA thiolase {ECO:0000313\|EMBL:AIB06952.1}
TAIR	AT2G33150	0	peroxisomal 3-ketoacyl-CoA thiolase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	4083174	4112887	+

Transcript Sequence
>GWHTAAEX012894 GAAGAAGATCCAGGAGGCTGTTTCGATGAAACCTACCACCAAATAACTCTTCGCTGTTTCAATGGTTACCTAACCCTCGAGCTTAAATGACATGCGGAAAAAGAAGACCTATAAAAGAGTATAGTCTGAATTATTTCTCAAAGTTCCTGTCTTCGTTTTCTTCTTACAACAGAGCTACAGAGTGTGGGCGAGAGAGATGGAGAAAGCAATCAACAGACAGAGAGTTCTCTTCCAGCATCTTCAACCGACTTCTTCTGGCAGTCCTCCATCTCTCTCGGCGTCTGTTTGTGCAGCTGCTGGCAGTTCGGAGTACCAGACGAATCAATCCTCTGATCATGATGTTGTTATAGTGGCAGCTTGCCGAACTGCAATTTGCAAGGCCAACAAAGGAGGTTTCAAGGATACACATGCAGAAAACCTTTTAGCTCCTCTTCTTAAGGTGCTGTTGGAGAAAACGCAACTGAACCCAAATGAAGTTGGTGATATTGTTGTTGGTACTGTCTTGGCTCCCGGTTCTCAGAGAGCTATTGAATGCAGGATGGCTGCCTTCTATGCTGGTTTCCCAGAAACTGTTCCTGTTAGAACTGTGAACCGACAGTGCTCATCTGGTCTTCAAGCTGTTGCAGATGTTGCTGCTGCTATTAAAGCAGGATATTATGATATCGGTATAGGAGCTGGTTTGGAGTCTATGACTTTGAACAAAATTGGATGGGAGGGGTCGCCTAATCCAAAGGCCAAACTTCTTCAACAAGTTCAAGATTGTTATCTTCCCATGGGCATTACATCTGAAAATGTTGCTGAACGCTATGGCATAACAAAGGAGGAGCAAGACCAAGCTTCTGTCATATCTCATAAACGTGCAGCTGCTGCAGTTGCTACTAATAAATTCAACGATGAAATCGTACCTGTGACCACAAAGATCATGGATCCAAAAACTGGAGCTGAGAATGAAATTACTGTTTCTATTGATGAGGGAATTCGCCCAGAAACATCCTTGTTAGGACTTGCAAAACTCAAACCTGCATTTAAGAAGGGTGGAAGCACCACCGCAGGCAATGCTAGTCAAATTAGTGATGGTGCTGGGGCAGTCCTCCTTATGAGGAGAAATGTTGCAAAGCGAAAGGGGCTTCCCATTCTTGGTATTTTCAGGAGCTTTGTTGCAATTGGAGTTGATCCAGCTGTGATGGGTATTGGCCCTGCTGTCGCAATACCTTCTGCAGTAAGAGCAGCTGGTCTTCAAATTAAAGATATTGACCTATATGAAATAAATGAGGCTTTTGCTTCTCAGTATGTATACTGCATCAAAGAGTTGGGGCTTGATCCCGAAAAAGTCAATGTTAATGGTGGTGCTATTGCTCTTGGCCATCCTTTGGGAGCAACAGGTGCACGCTGTGTAAGTACTTTATTAAATGAAATGAAGCGTAGGGGCAAGGCTTGCCGATTTGGCATCATTTCCATGTGCATTGGCTCTGGAATGGGAGCTGCGGCTGTTTTAGAGAGAGGAGATTCAGTTGATTGCTTTTGAGACACGCTCGGATTTCCATCCTAAGATCTGTTGCTTGATTGCTACACAGCTCAAGCAGCAGTCGGTTTTCATGTAAAATTAAATTTTCATCTAAATTATTTTAAACTTCAGAACTTTATGATAAAATCCGTAAATTTGCACAAATATCAATGCCTATTTAATAGCTGTTTCTTTTTTTTTTTCTTACATAGAGGTGAATTTTAGCAATACTTCTGATCTTGAGAAGCTGAAAATGTTTTTCGAAATGATTCAAATGTGATATGTTAAAAGGTATGATGAGATCGAAATTGCAGAGAGAAATGTTATGAAGGGGACTTTAGTGCTTTTCTGTAATTTGGGTATAAAATGAAATTATTATTTGAATTCTTAAAAAATGGTTGTTTGTCTGTTGCATTCATATTATCTCTTAATAATAGGAGATAGCAGTTGTTTGGTTCAGTGTAGGTTATTTCGTTTTCAATTTATTAACAATTTTGCCACTGTATTATGTTATCTCCCCTAAATGGCCAATATTTATAAATGGAACATTTTGATTCACACCCTTTATTTCTAACAGAGTTCATTTTGTGAGCATCTCGTCCCTTTTTGCCCATCTTACCCTTCAACAACGTGAGACCATGTCCTCTCTTTGAGATGGTCAATCTTTGCCTCGCTATTTCTTTTTTCCCATTTTCTGTCGAAAGTTCTCTTTGGGAATCCACTTGAACACAGCAAGCAACACCTTTACTGATCACACAGCAGACAATTAAGACTGTACAATCCACTCCTTTAGCCGCTTGATCGCAGGGTTGTGGATATTCCCTCCTTCAAGTTGTCTTGAGACAAAGTCTCATCAACCCCTACTTTATAAGCTGCAAAGCCCTTTCCTTTCTTGAGCAATACCAAGGTGGAGCTCGTTGATAGGCTGAAGTGTAAGTTTATGTGACATTCATGGTTTAAGGTTTATATATGCTTGATTGAAGCATTATAGATCCTAGCATGTTATTATTGTGCATAAGATAAATAAACACAACCCATTACAACCTTTAGAAATAGCACTAAGTTGCTTACAGGCTATAGCTTAACAGAATCACAATTTCAAAGGAGCTAATACATATCATAGCATAACAATTTTAAGTTCAACAGCTTCACAGCAATACATTTTTTTTTCTTTTTCCTGGCATTAAGCATTCTAGCGAGCAAGTATGTTAATTCAGTACAAAAAAAATAAAACAGTATTAATTGAAAAAGCATCTAGATTGTACTTTGGAATGAATGAATGCAATATAGATATGCCTTTTGATCTTAGCTCTGGTTCTATAAAAATATGCGTGCTGATTATCTCATATATACTATGAATGTTTAGAGAATGTATGCATTTTATTATTTTGTTCTGTTAAAATTGGAGATTGAATACTGCTTGATGGTTTTTCTTCATCTTCAAAATAAGTTCTTGATGGAGAATAATAATGGTTTCTTGGCATGATTTTTATTTCTAATACACGGTTGTGTTGGTTATATTTTTTCTTCTTGCATAGGTCTAATTAGATCAACACATTGCGTGTTGACCTTGATGAGGCGGGTTAGACTTTGAGCACCCAGGCGACTGAGCTTTTGCGAACAGAGCACGACTACTTCTAAAGCTCGAGGCTGTGTGACTAGCTAACACTAATCCACAACCGGGTGGATGATTATTAATGGGCCAAAAATCCTACCAATGTGAAGAACAATAGAGTGTGTAATAAAAAATGATAGGTATGGGAAACAAATCATCCATCCACATCATTTCATCCGGAAG

Network for GWHGAAEX012894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.22	Thiolase_N	49	303	5.10E-74
PF02803.17	Thiolase_C	313	435	5.80E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07513	ACAA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Fatty acid metabolism	map01212
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Biosynthesis of unsaturated fatty acids	map01040
		Cysteine and methionine metabolism	map00270
		Peroxisome	map04146
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.510
SRP064423	SRR2545915	Juvenile tuber	48.760
SRP108465	SRR5643513	five period of Gastrodia elata	66.360
	SRR5643514	five period of Gastrodia elata	56.020
	SRR5643515	five period of Gastrodia elata	77.610
	SRR5643524	five period of Gastrodia elata	74.950
	SRR5643525	five period of Gastrodia elata	28.270
	SRR5643528	five period of Gastrodia elata	42.400
	SRR5643658	five period of Gastrodia elata	36.670
	SRR5643659	five period of Gastrodia elata	71.780
	SRR5643660	five period of Gastrodia elata	71.230
	SRR5643661	five period of Gastrodia elata	80.630
	SRR5643662	five period of Gastrodia elata	49.060
	SRR5643663	five period of Gastrodia elata	66.140
	SRR5643664	five period of Gastrodia elata	42.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	69.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.740
SRP279888	Gastro	Gastrodia elata tuber	75.02
	Juven	Juvenile tuber	84.93
	Mother_Gastro	Mother tuber of Gastrodia elata	31.50
	Mother_Juven	Mother tuber of Juvenile	54.07