Gene detail

Detail information of GWHGAAEX012895/evm.TU.scaffold_47.118

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|261416687\|ref\|YP_003250370.1\|	7.00E-43	SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes S85]
KOG	KOG1015	0	Transcription regulator XNP/ATRX, DEAD-box superfamily
nr	gi\|672175762\|ref\|XP_008807947.1\|	0	PREDICTED: transcriptional regulator ATRX isoform X2 [Phoenix dactylifera]
Swissprot	tr\|F4HW51\|CHR20_ARATH	0	Protein CHROMATIN REMODELING 20 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|U5D694\|U5D694_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN15878.1}
TAIR	AT1G08600	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	4153160	4238140	+

Transcript Sequence
>GWHTAAEX012895 GCCGGTTAAAATCCTCCATGTATTCGCTCCTGCGACCCTTCTTCTCCAACCTTCGGTTCAACCTTGTTTTTAGTTGGAGAGCTCTGCGATCTTCTCTCCCGCAACACCTCTTTGTCTACCCTATAGCTTTGTTAAGGTGTTATATCAATAGATTGTAGGGAGAATCAAGAGACATAATGGAGGATGGGGAAGATTCAAATGATAACCTTGAAGGAAAGGATAATATGAGTTTTCTTAATACGGATTGTAAAACGAAGGAAAATATTTTACATTTAGATGGCATGAAAGATGTGAAGAGCAAACAAGTGGATGCTCCCAATAATAGAGCTGACGACCTTTTCAGGAAGATTCCAGAAGTTATTTCTATAAAGGATTCTGAAGAGGGTTTCCTAGATTTAAAGTTAGAAGGTTCGCTTGATATTTCAGAGGATTGTGACAGTGATTCTGTTGTCATGCTTAGTGATGATTTTGATACCAAGGAAACATCATTATCAGGAACTGATGATGAGAGGATACCAGAGGCACCTTTAACTGACCTGGAGATTGAAGAATTAGTTGCAGAATTTCTAGAAACTGAGGGCAAGGCAGCAGAAGCTCAAGAATCACTTGAGAAGGAATCTCTTGCTCAAGTTGAAAAAGAAGTAAGAGAAGAGCTCTCCCAAAATCTTTATGGGGATGCGCTTGAACTTGCTGTATCAACGGAAATGCAAACATTCAAAGAAGAATGGGTGGCTGTACTTGATGAGCTTGAGACTAAGAGTACTCTGCTTTTGGAGCAACTTGATGGTGCTGGTATAGAGCTCCCTGCTTTGTATAAGTGGGTTGAAAGTCAAGCTCCTAATGGTTGTTGCACTGAAGCTTGGAAGAAGAGGATTCATTGGGTAGGCTGTCAGGTTTCCAATGAAGCGAGTATATCAGTTAAAGAAGCTGAAGAATACCTTCACTCCAATCATCCTGTACCAAGGCAGCATGGTAGACTGTTGGAGGTTGGTGCTAGCGGATTTCTATCAAGGAAACTTTCTAATGGAGATAAGAATGGAGATAAGAATGACATAGGCGATTGGAGTTCATTCAATGAGCTTATTCAGTCTCAGAAATGCTCTACTTCATTTGGCAGCGAGAACTGGGCATCTGTTTACCTTGCAAACACACCTCAGCAAGCTGCAAACTTGGGACTAAAATTTCCGGGTGTTGATGAGGTAGAAGAGATTGGAGAGATTGACTTTGATTCAAAAGATCCTTTTTATTCTGATGCAATTGCAAATGAAAAAGACCTTGATCTTACTGATGAACAAAAAAAAAACTTCAGGAAGGTTGCGGAAGATGATGATGCCAATCATACGCGTAAATTACAACAGCGCCTGAAGCGGAAACGGCAAAAAAGAGAGAGATGTCAACTGCTAGCTGACAGAGATGCTCCGTTTGGTTTTTCTTCAAATGAATGCCCTCAAGTTGATTCTTTGTTGCAATTCCATTCTGAAAATGGTTCTGTAGATGTTCATGATGGCGTCATATCTGAAAAGTCCATCAGGAGTAATATGGATAATACAACTATAACTGAAAGTGCTACAAATGGTGAATGGAATCATTCACCAGACATTGACAAATTTGAAACAAAGAAAAAGAAATGCAACACCGTTTTTGTAGACAGTGATGATGAAGTTCAATTGGTGGATAGTAGAAAGAATCCTTGTGCTCATGGTGCAGCCAACACTGAGCAGCATTCATCAAAACAAGTTAAAACCATTGATGTTATTGATGTTGATAACGTGCCTTCTCCAGATCTTGAAAACCATAAAGCGTTTGGAAAAGATTTTGTTTGTACAGCTTGTTGTGATACCCTAAAGGCTACTCTAGTGCACAGGCATCCATTATTGGGAGTGGCTCTTTGTGGCCGCTGCAAGTCTAACGTTGAAGAAAAGACACTACTTAAGAGTGCTGCCTCAGGTGAATTTTGTTCATGGTGTGGAAAGAGTGATGACTTGGTGAACTGTGACACATGTAAGAAGCTTTTTTGCGAGGCATGCATATCAAGGAATTTTGGTGAAGAAAATTTATCAGAAGCTAAAGCCAGAGGCTGGCGTTGTTACTGTTGTTTACCTGTTTTGTTGCATCGGCTTATTGTTGACTGTGATAAAGCCCTTGGAGTCTTGCCTGTTTCTAGCTCTGAAAGTGATTCAGCATTTTCTGATACTGGCATTGATGTATCACTAAGCAAGAGACGTAAGAAAAAGATCAGAAGAATCCTGGATGACACTGAACTTGGTGAAGAGACTAAAGAAAAAATAGCAATTGAGAAGGCCCGGCAAGAGCATCTAAAATCAATGCAAGTACAGTCTGCTAAGAAATCTTGTGGTAAAGCACAAGAAGAAATCAACAGGTGCACCTTAGCAATTGAAACTCTCAGGATGCTTGATGATCCAGTAAAAGGTTATGTGGTTAATGTTGCTAGGGAGGATGATGAAGAGCCAGTTAGAATTGCTCCTAGTTTATCTTTGAAGTTAAAGCCGCATCAGGTTGAAGGAATACGATTTATGTGGGAGAACATTATACAATCTGTAAGAAAAGTTAAATCTGGGGACAAGGGTCTTGGATGTATTCTAGCCCATACAATGGGCCTTGGTAAAACTCTTCAGGTGATAGCATTCTTATACACGGCCATGAGAAATGTTAATTTGGGGCTGAGAACAGCGCTTATAGTGACTCCCGTAAATGTGCTTCACAACTGGAGGCAAGAATTTTTGAAGTGGAAGCCTACTGATTTGAAGCCTCTTCGTGTTTGGATGCTGGTAGATGTTGTAAGAGAGCGGAGAGCACATTTACTGGCAAAGTGGAGAACTAAGGGTGGCATCCTTTTGATAGGATATGCTGCCTTCCGAAATCTATCTCTTGGAAGACATGTAAAAGATAAGAAGGTTGCTAATGAAATTTGCCGTGCCTTGCAGTTTGGACCTGATGTTTTGGTTTGCGATGAGGCCCATATGATCAAGAATACAAGAGCGGACATAACTTTAGCTTTGAAACAAGTACGAACACAAAGAAGAATTGCATTAACGGGATCTCCATTGCAGAACAATCTTATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGATTTCTGGGAAGTAGTCATGAATTTCGAAACCGATTTCAGAATCCCATAGAGAATGGACAACACACAAACTCTACTGCACATGATGTAAAAATTATGAACCAGAGATCACACATTTTATATGAACAACTTAAAGGATTTGTCCAACGAATGGATATGAATGTAGTTAAGAAAGACCTCCCTCCTAAAACTGTTTTTGTGATCGCCGTAAAGCTCTCTCCGTTGCAGAGAAAGTTGTACAAAAGATTCTTAGATCTGCATGGATTTACAGTAGACAAAGTGTCTTCTGACAGAGGAATGAGGCGCAGTGGCTTCTTTGCGGGCTATCAGACACTTGCCCAGATATGGAATCATCCTGGACTATTGCAATTGGCCAAAGAACACAAGAATAGCTTAAAGCGAGAGGATGCTGTTGAGAATTTTATTGTTGATGATACATCTAGTGATGATAACATGGAACAGAATGACATGAACAATGGAGAAAAACTGAAGGTTAAGAGTGATTTTATACTCAAAATGAATAATGAGGAGAGTGAGTGGTGGAAAGATCTTCTTGATGATAAGATGTACAAGGAAGTTGAATACAGTGGTAAAATGGTTATACTGCTTGATATCCTGTCAATGAGTTCAGAGGTTGGTGATAAGGCACTAGTGTTTAGCCAAAGTCTGACAACATTAGATATGATAGAACTTTTCTTATCAAAATTACCCCGGAAAGGTTCGGAAGGAAAGTATTGGAAACAAGGCAAGGATTGGTATAGGTTAGATGGAAGCACCGATGGCTGTGAGAGGCAAAAGCTCGTTGAGAGGTTCAATGAGCCAACAAACGCAAGGGTGAAATGCACATTAATATCCACTCGAGCAGGATCGCTAGGAATAAACTTGCATGCTGCCAATCGAGTTATTCTTGTTGACGGTTCTTGGAATCCGACCTACGATCTTCAAGCCATATTTCGTGTTTGGAGATATGGGCAGAAAAAGCCTGTTTATGCTTACCGGCTGCTGGCGCACGGTGCCATGGAAGAAAAGATCTACAAGAGACAGGTGACAAAGGAAGGAATGGCGGCCAGGATTGTGGACCGGCAACAGATACACAGAACCATGTCCAAGGAAGAGATCCTTCATCTCTTTGATTTTGGCGATGAGGAGAATTTAGAAGTGCTCAGTCAGGCTAATAATAATGATAATAAACTTAGATGCTCACAGCAGCAAGACAACTCCCTTCTACCTTCTGCTTCTCCCCACTCTTCTGACAAGATTATGGAAACCTTACTCAGAAGGCATCAGTCCCGGTGGATAGCGAATTATCATGAGCACGAGAGCCTGCTTCAGGAGAACGAGGACGAGCGGCTGTCGAAGGAAGAGCAGGAATTAGCATGGCTGAGCTTTCAGAGATCCCTTGAGTGGGAAGAGGTTTACAGCCACAGGGCAGCAGCAGTAGCCCCCGCCAATGATGCCAATGACCGTAAACCCTCCACATCTGCTGTTCAAAACCCCTCATCAGAGGCTCATCATCATCATCATCCTCAGCAGCAGCAGCAGCAGCTGCAGCTGAATTCTTTATTACCACATAGCAAAGGAGGTGGAAGCAGCAGTTCAAGGGGAAGCCATCATCAAAGTGCAGCACATCAAAGGAAGTGCAGCAATCTCGACCACCTGCTGAGGCTAAGAAGCAAGGGCATCAAGTCCGGCTCCAGCACCTTGTGCGAGAAATGCTGCCAGGAGATTGGCTGGGAAAGCCTTAACCGGGATGCCAAATCCAAGTGATTCTAATTTATCACCTCTTTTTTTATTATTTCATTAATAATATTATTATTTTTTGTTTTGGCCATATCAGAACATAATGGTCGACCAGGCTGGGGCAGGCTGTGGCGGGCTGGGCTGGTTAATCGCCCTTGTTAACAGGTGGGCAACTACTTTTGTCTAATGTCTCACTGTAGGTGGCTGTGTGAAAATGTAGTGATCTGTTTATATTATTAGCGCTAATGCTTAAATATCTCTTAGTCGCTGATCAGTTTATATCTGTCGACCATCTTTACTATTTTTCGTATGCCAACTTTATTAAAATCTAGTTTGATGGAATGTAAATATAAGTATTACGTCTCAGGTTTATACTAGTGCTTAGAAATATATCTTCTTATCAATGTTTTGTTCCTTGACTCTAGTTTGATTGGCTGGGAAAGCATGAATACCTTTCTTTGGTAGTTCTGTTATTCTTTGAGGAAATGATATTGTGTAGTTGACGAATTCTGAATGTTTAAGAGAATTTATATAATTTGCTGCTTAC

Network for GWHGAAEX012895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	781	1101	1.30E-52
PF00271.30	Helicase_C	1178	1304	2.50E-14

Protein Sequence

>GWHPAAEX012895
MEDGEDSNDNLEGKDNMSFLNTDCKTKENILHLDGMKDVKSKQVDAPNNRADDLFRKIPEVISIKDSEEGFLDLKLEGSLDISEDCDSDSVVMLSDDFDTKETSLSGTDDERIPEAPLTDLEIEELVAEFLETEGKAAEAQESLEKESLAQVEKEVREELSQNLYGDALELAVSTEMQTFKEEWVAVLDELETKSTLLLEQLDGAGIELPALYKWVESQAPNGCCTEAWKKRIHWVGCQVSNEASISVKEAEEYLHSNHPVPRQHGRLLEVGASGFLSRKLSNGDKNGDKNDIGDWSSFNELIQSQKCSTSFGSENWASVYLANTPQQAANLGLKFPGVDEVEEIGEIDFDSKDPFYSDAIANEKDLDLTDEQKKNFRKVAEDDDANHTRKLQQRLKRKRQKRERCQLLADRDAPFGFSSNECPQVDSLLQFHSENGSVDVHDGVISEKSIRSNMDNTTITESATNGEWNHSPDIDKFETKKKKCNTVFVDSDDEVQLVDSRKNPCAHGAANTEQHSSKQVKTIDVIDVDNVPSPDLENHKAFGKDFVCTACCDTLKATLVHRHPLLGVALCGRCKSNVEEKTLLKSAASGEFCSWCGKSDDLVNCDTCKKLFCEACISRNFGEENLSEAKARGWRCYCCLPVLLHRLIVDCDKALGVLPVSSSESDSAFSDTGIDVSLSKRRKKKIRRILDDTELGEETKEKIAIEKARQEHLKSMQVQSAKKSCGKAQEEINRCTLAIETLRMLDDPVKGYVVNVAREDDEEPVRIAPSLSLKLKPHQVEGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTLQVIAFLYTAMRNVNLGLRTALIVTPVNVLHNWRQEFLKWKPTDLKPLRVWMLVDVVRERRAHLLAKWRTKGGILLIGYAAFRNLSLGRHVKDKKVANEICRALQFGPDVLVCDEAHMIKNTRADITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAHDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDLHGFTVDKVSSDRGMRRSGFFAGYQTLAQIWNHPGLLQLAKEHKNSLKREDAVENFIVDDTSSDDNMEQNDMNNGEKLKVKSDFILKMNNEESEWWKDLLDDKMYKEVEYSGKMVILLDILSMSSEVGDKALVFSQSLTTLDMIELFLSKLPRKGSEGKYWKQGKDWYRLDGSTDGCERQKLVERFNEPTNARVKCTLISTRAGSLGINLHAANRVILVDGSWNPTYDLQAIFRVWRYGQKKPVYAYRLLAHGAMEEKIYKRQVTKEGMAARIVDRQQIHRTMSKEEILHLFDFGDEENLEVLSQANNNDNKLRCSQQQDNSLLPSASPHSSDKIMETLLRRHQSRWIANYHEHESLLQENEDERLSKEEQELAWLSFQRSLEWEEVYSHRAAAVAPANDANDRKPSTSAVQNPSSEAHHHHHPQQQQQQLQLNSLLPHSKGGGSSSSRGSHHQSAAHQRKCSNLDHLLRLRSKGIKSGSSTLCEKCCQEIGWESLNRDAKSK

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.200
SRP064423	SRR2545915	Juvenile tuber	22.850
SRP108465	SRR5643513	five period of Gastrodia elata	15.080
	SRR5643514	five period of Gastrodia elata	15.810
	SRR5643515	five period of Gastrodia elata	15.170
	SRR5643524	five period of Gastrodia elata	14.770
	SRR5643525	five period of Gastrodia elata	16.900
	SRR5643528	five period of Gastrodia elata	14.510
	SRR5643658	five period of Gastrodia elata	16.810
	SRR5643659	five period of Gastrodia elata	15.260
	SRR5643660	five period of Gastrodia elata	18.420
	SRR5643661	five period of Gastrodia elata	14.640
	SRR5643662	five period of Gastrodia elata	16.040
	SRR5643663	five period of Gastrodia elata	16.290
	SRR5643664	five period of Gastrodia elata	19.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.480
SRP279888	Gastro	Gastrodia elata tuber	19.91
	Juven	Juvenile tuber	25.53
	Mother_Gastro	Mother tuber of Gastrodia elata	25.74
	Mother_Juven	Mother tuber of Juvenile	29.20