Gene detail

Detail information of GWHGAAEX012900/evm.TU.scaffold_47.128

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|83313539\|ref\|YP_423803.1\|	molecular chaperone DnaK [Magnetospirillum magneticum AMB-1]
KOG	KOG0102	Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily
nr	gi\|672135882\|ref\|XP_008791620.1\|	PREDICTED: heat shock 70 kDa protein, mitochondrial [Phoenix dactylifera]
Swissprot	tr\|Q01899\|HSP7M_PHAVU	Heat shock 70 kDa protein, mitochondrial (Precursor)
trEMBL	tr\|F6HCT7\|F6HCT7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50032.1}
TAIR	AT5G09590	mitochondrial HSO70 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	4595491	4611135	-

Transcript Sequence
>GWHTAAEX012900 ATTCGTTGGTCATTTTAAGTTGGCCATCTCTCCGAACCCTCTTAAAACCCTAGTTCTAATTACTTCCGCCACTTTGGGGAGTTCCACATGGCGTCGGCAGCTGTCATCAGGGCGTTGAAACGGCGGGAGCTATCTGCACCTCTGTTTTCTCATCTCAGATCTCCTTGTGGACTCGCAAAGACATTGTGGAAAGGTTCTCCTTCAATTCACAGATGGGAAAGACTTGCTAGGCCATTTAGTTCAAAACCAGCAGGGAATGATGTAATCGGTATTGATTTGGGGACTACCAATTCTTGTGTTGCTGTCATGGAAGGAAAGAATCCAAAAGTGATTGAAAATTCCGAAGGAGCACGAACGACACCCTCTGTTGCTGCTTTCAACCAAAAGGGTGAACTTCTTGTCGGAACTCCTGCCAAGCGGCAGGCAGTGACCAATCCGACAAACACGGTATCTGGAACCAAGCGCCTGATTGGACGCCGTTTTGATGATCCTCAAACTCAAAAGGAAATGAAGATGGTGCCTTATAAGATTGTCAGGGCTCCTAATGGGGATGCTTGGGTTGAGGCTAATGGACAGCAGTACTCCCCAAGCCAGATTGGTGCCTTCATCCTAACAAAAATGAAAGAAACTGCTGAAGCCTTCCTTGGAAAACAAGTATCGAAGGCAGTAATAACCGTTCCAGCGTATTTTAACGATGCTCAAAGACAGGCCACCAAAGATGCTGGAAGAATTGCCGGCCTCGATGTGCAGAGGATCATCAACGAACCTACAGCCGCAGCCCTTTCTTATGGGATGAATAACAAAGAGGGTCTCATTGCAGTCTTCGATCTTGGAGGCGGAACTTTTGATGTCTCCATCCTAGAGATAGCAAATGGCGTCTTTGAGGTTAAAGCTACAAATGGTGACACCTTCTTAGGCGGGGAGGATTTTGACAATGCGCTGTTGGACTTCTTGGTGACCGAATTCAAGATATTAGAGGGGATAGATTTGTCAACGGACAGGTTAGCTCTTCAGAGGCTGCGCGAGGCCGCCGAGAAGGCCAAGATCGAGCTCTCCTCAACGTCCCAGACCGACGTCAATCTCCCGTTCATCACGGCTGATGCATCAGGCGCGAAGCATCTGAACATCACTCTGACAAGATCAAAATTCGAGTCTCTGGTGAGCCACTTGATTGAGCGGACCCGAAATCCATGCAAGAGCTGCTTAAAAGATGCTGGGATCTCATTGAAGGATGTCGATGAGGTCCTTCTCGTGGGTGGCATGACTAGAGTCCCTAAGGTTCAGGAAGTGGTTCAAGAAATCTTCGGGAAGATTCCGAGCAAAGGGGTGAATCCGGATGAAGCTGTTGCTTTGGGCGCTGCCATTCAAGGTGGCATTCTCCGGGGGGATGTCAAGGAGTTACTGCTCTTGGATGTCACCCCTCTCTCTCTTGGGATTGAGACTCTAGGTGGCATCTTCACCCGGTTGATCAACAGGAACACCACCATTCCTACTAAGAAGAGCCAGGTGTTTTCTACTGCCGCAGACAACCAGACCCAGGTTGGCATCCGCGTGCTCCAGGGCGAGCGAGAGATGGCTACAGACAACAAGCTACTTGGTGAATTCGATCTTGTTGGGATCCCGCCGGCGCCCAGAGGCATGCCTCAGATCGAGGTCACCTTTGACATTGATGCCAACGGGATCGTGACTGTCTCCGCGAAGGACAAGACCACTGGAAAGGAGCAGCAGATCACCATTCGTTCATCGGGAGGCCTTTCTGATGTGGAAATTGAGAAGATGGTGAAGGAGGCTGAAATACACTCTCAGAAAGACAAGGAGAGGAAGGCCCTTATAGACCTCAGGAACAGTGCTGACACTACGATATACAGCATTGAGAAGAGCTTGAGCGAGTACAGGGATAAGGTCCCTGTCGAAGTCACTTCGGAGATCGAGTCGTCCGTCTCTGAGCTCCGTCAGGCAATGGTGGGAGACGACATCGATCTGATTAGGACAAGGCTTGATGTGGCGAATAAGGCGGTGTCGAAAATCGGACAGCACATGTCTGGAGGAGCGGGCGGAGGATCCTCTTCCGGTGGTTCTCAGAGCAGTGATCCTCCCCCGGAGGCGGAATACGAGGAGGCGAAGAAGTGAGAACATTCAGTGCAAGGGCATTATAGATCAGGTTCGCTACCTTTTTTTCTTTCATGTATGAGATTTCTGTTGTTATTTTTGCTCATGATATAAGCTCTAAATTTGTTTTTCATGCATTTAGTCTTTTTATGGGAAACCAGTAGATGATCAGATATGCAAAAGGAACTTTCGTTTAGTAAATTTTGTATACTGTTTCAGATAATAAAAAGTGTTGCTATGCTGAACTTGCAGGCTTGCTATTATGCTGAATCTCATATATATAACTAACCTAGCACCTATAATATAATTTTTATAAAATTATCACCCAATTTTCTTCTTTTATTATATACTGATTTTAAATATGAAGTGATATGTTGTTTGTTTGTAAGCAAGCTTTTGAACATAGTATTGTTCACTTCATTTTTGTC

Network for GWHGAAEX012900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.19	HSP70	59	651	9.90E-268

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04043	dnaK, HSPA9	RNA degradation	map03018
K04043	dnaK, HSPA9	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006457	Biological Process	protein folding
GO:0051082	Molecular Function	unfolded protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	101.710
SRP064423	SRR2545915	Juvenile tuber	129.050
SRP108465	SRR5643513	five period of Gastrodia elata	118.640
	SRR5643514	five period of Gastrodia elata	118.280
	SRR5643515	five period of Gastrodia elata	106.860
	SRR5643524	five period of Gastrodia elata	119.330
	SRR5643525	five period of Gastrodia elata	38.390
	SRR5643528	five period of Gastrodia elata	38.970
	SRR5643658	five period of Gastrodia elata	25.820
	SRR5643659	five period of Gastrodia elata	179.500
	SRR5643660	five period of Gastrodia elata	197.410
	SRR5643661	five period of Gastrodia elata	190.290
	SRR5643662	five period of Gastrodia elata	173.460
	SRR5643663	five period of Gastrodia elata	167.700
	SRR5643664	five period of Gastrodia elata	190.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	162.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	107.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	157.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	157.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	160.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	160.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	166.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	162.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	200.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	196.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	167.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	167.270
SRP279888	Gastro	Gastrodia elata tuber	230.19
	Juven	Juvenile tuber	241.80
	Mother_Gastro	Mother tuber of Gastrodia elata	57.24
	Mother_Juven	Mother tuber of Juvenile	108.77