Gene detail

Detail information of GWHGAAEX012903/evm.TU.scaffold_47.136

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672180577\|ref\|XP_008810486.1\|	2.15E-94	PREDICTED: auxin-responsive protein IAA6-like isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q8LQ74\|IAA6_ORYSJ	5.00E-66	Auxin-responsive protein IAA6
trEMBL	tr\|D9ZIM7\|D9ZIM7_MALDO	1.00E-72	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR	AT3G16500	3.00E-62	phytochrome-associated protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	5291381	5295508	-

Transcript Sequence
>GWHTAAEX012903 GGGCTTTGAAGTAAATATGAAATACGTAGGGTTTAAAATCTATAATATGAGATGCAAATCTAAATATTTTATATTATCTCAATATAGTATTTTATTTGTCACCAGTATAAATTAGAATATTGCTTTTATTTAAACGATATATTATTATTCTTCAACACAGCGCCAGCTGCTCAGAGTTTCTCCGGAGGCCTACGCTTTCAAAGTTTCAACGGCTCTGTTTTCGCCTCCCCCCTGATAGCCCCCCCCCATAAATGGCAACCCAGCTAGCCACAGGCTGATCTCACCCTATCACCAGCAGCACTATCTCTGTAGCCTTAAGTGTAGCCGCCTCCAAGGTTTTTTTTTACGCCCCAAATTGAACACCCCTGTTCACTTTTAACAATTCTTCCTTCGACCGCAAAGCTGAGAAACAAGTAGAGGGCTTTTTTAATATAGATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGAGAGGGGTGGCTTATTAAATCATCAGGTTCATTGCGTAGCTTGGGAAAGGGAAGGGCTTTCGAGCTCTGGCAGTGCTTGCGTGGGCGATGCACCAATTCCTTATACAGGCCTGATATAAGCCAAAGGGAATCGCCTTTACTGATTCTCTATTCATTGGCTGCAAAAAGCAGGAGGGGGCGGTGGCAGAAACTGCAGAGACGCGTGACAGCAGAAGCGTTTATTTCTTGTTCTTAAAAAGGCCGCCTTGTTAACTAAAAGAGGGAGAGAGTTTGGGCAGATGGGAGGTGAATGTCCTCAGCTGCTCGATTTGATTCCCAATGAGAAAAGCTGGTTAAAGAGAGATGCAAAGGAGACGAGCTTGGGAGCTTCAGAGGAGAAGAAACTGGAGCTAAGGCTTGCTCCTCCTGGTGCTGAAGAGCAACCGAATAAGCTTTCTGCTGTTCTGTCTTCTACCTCCTTCTCAAAATTCCCCAAATCCTTCGACAAAAACTCTTTTGTTGGAGCCAAAAGGGGTTTCCTGGACACTGCTGAGCCGAAATCAGAAGGGTTTCAGCAGGGTCAGACTGCTCCTTTAAAAGAGGATGGGAGGATGGTACAGAGCCATGAGCGAAGGGATCATATTGGAGCTCTGGTCAAGAACTGTGCTCAGATAAGAACAACGACCTCTTCTCCAGTTGTCGGGTGGCCTCCAATTCGTTCATTCCGAAAGAATATCGCTGCCGCATCAGCCAAGCAATCAGACGAGCTGAGAAACGGAGAACGAGAGAACACTTCAAAGGGCGAGACTTTGAAGAAGGGATTGTTTGTCAAGATTAACGTTGATGGCATCCCTATTGGGAGGAAAGTGGATCTTAATGTTTATGATAACTATCAGAAACTCTCCTCTGCTGTGGAAGAGCTCTTCAGTGGTCTTCTTGCTGCTTCGGGCACAGGCATCACTGAGAACGAAAGAATGGCATTCAGAGGCCTGCTGGATGGAAGCGGCGAATATACTTTAGTGTATGAAGACAATGAAGGAGACAGAATGTTGGCTGGGGACGTTCCTTGGGACATGTTTGTTTCTACTGCAAAGAGATTAAGGGTGCTGAAAAACTCTGAACTTTCTGCATTATTTCTGGGTGCTCTGATGAACAAAAAGAGGGCAGCAGATTGATTAGCTGAATTAAAAAGGATTTTGGATTGTAAGATTTTCCGACTGGCTTTTTAATGCTAATTTCAGTGAAATGTTATGTACGGTACTGTGCTGTTAAGAGTTTTTCTTCTTTTACAAACTGAGTAGGTGAGTCGTGTTTGCAGCTAATCATATGTGAAATTGTGAATGTTTTTTCTTTTTGCTCCCTCTTGTATTGTAATATTAGTTTTGACAGTGTCATCTGTTGATGATTCTGTTGTTTATTGTGTAATTTTATACTAGGTTGTTGAAATGAAACATTGTTTATTATTTTTCGTTGGGTTTTTCTTAGCTTTGAA

Network for GWHGAAEX012903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.15	AUX_IAA	36	278	6.40E-66

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	79.180
SRP064423	SRR2545915	Juvenile tuber	60.700
SRP108465	SRR5643513	five period of Gastrodia elata	33.540
	SRR5643514	five period of Gastrodia elata	23.940
	SRR5643515	five period of Gastrodia elata	22.260
	SRR5643524	five period of Gastrodia elata	16.700
	SRR5643525	five period of Gastrodia elata	148.360
	SRR5643528	five period of Gastrodia elata	114.940
	SRR5643658	five period of Gastrodia elata	107.930
	SRR5643659	five period of Gastrodia elata	57.970
	SRR5643660	five period of Gastrodia elata	75.770
	SRR5643661	five period of Gastrodia elata	47.920
	SRR5643662	five period of Gastrodia elata	52.680
	SRR5643663	five period of Gastrodia elata	40.360
	SRR5643664	five period of Gastrodia elata	65.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.760
SRP279888	Gastro	Gastrodia elata tuber	75.29
	Juven	Juvenile tuber	40.20
	Mother_Gastro	Mother tuber of Gastrodia elata	59.77
	Mother_Juven	Mother tuber of Juvenile	46.83