Gene detail

Detail information of GWHGAAEX012908/evm.TU.scaffold_48.7

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2590	8.00E-28	RNA-binding protein LARP/SRO9 and related La domain proteins
nr	gi\|743779269\|ref\|XP_010920098.1\|	2.70E-100	PREDICTED: la-related protein 1C [Elaeis guineensis]
Swissprot	tr\|Q94K80\|LRP1C_ARATH	7.00E-44	La-related protein 1C
trEMBL	tr\|M0RNE4\|M0RNE4_MUSAM	4.00E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01130_001}
TAIR	AT4G35890	8.00E-28	winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	283339	328845	-

Transcript Sequence
>GWHTAAEX012908 GCTAGCCATAGCAATATTTGGAAGTCTCTCACTCCCCAGCGTGGGAAACGGGAAGTTGATCTCAACCTTGCGGATTCCCTCAACTCCCCCACAGCGTGGGAAACAGGAAGCTGACCGGGAAGGGAAAGGAGTGAGGGAGCCTCTCTCGCGCCTGTGCTTCTTTCAGATCCCATAATTGTTTTCTGGGAGGGGAAATGCATCAATAAGCTTTTACTCCTTCCTTTCTCGTCGTTGCAAAACATTATCCTGATTTCTCTCTCTCCATTCCTGTTTGCGTCAAGTTCCTCGGATCGAACCCTAACCAATCCTTCCTAGGGATGGCATCTTTTGTCGATTCTATTTCCTCCCCGCGTTCTTCCCAGGAACTCCCCAATGCTCCTTCTCCTACACTCCCTTTATTACATGGTAATGACGCCTTGTCGTCTTCCTCCGCGTTGGCACCCCCGATCGCCTTGCCGGTGATCCCAGGACGATCTCCGCGGAAGCCATTTGTTGAAACTCAGCCGCCGCGCTCTACGTTTGGCTCCGATCATGGCGGCAGTTGCAATGCTGCCGATGTTTCTGCCATCCCCCGGGTGAAGAAGCCGGCTTGGAACGTTCCGTCGAACAGTGTAATAGAGCCGGGATCCGTCATGGACACCATCTCCTGGCCTGCGCTCTCTGAGTCTGCCAGAGCTTCGCCAAAATCGTCATCTTATGATTCCCCGAGGGCCCTTTCCGAAGGATCAATCTCTGCTCTGCCGATTTCCTCGGTGCCATCTCCGTCATCCAAGCACGCTTTGAATAATCAAAATCTTAATTCAGCTCAGAATTCTCCATCTCCCCGTGGCAAGACCACGAAGGACGGTACAGTTACTGGAGGCGGCAGCAACATTTCTGGAGCATCGAACGACACACTTGCCGTGCCATCTTCGTTGCCAGCTTTAACAGAGGCAAGCCAGCTTGTGTCTGGCAAACAGTCTTCTCCAGAAAATTCTCCACAAGGCCTCCCAAACCAAAATAACAACACTGATTATGACAGGGATAATAACTCTAAGGGAGGTGGATTTTCTTCTCATTCTCATGGGGGTAATGATCACCATCGGGGTTATGGCGGGGGCAGAAGGGGCGGCAATGGACATCATGGGAATTATGGTAACAGACGCAACACGGAGCGTGGAGGTTATGAATGGAGTCCTCGGAATTTCGCCAGAGGCTTCCACATGCAACAACTGCATCAACAGCGAGGTGTTGGGCCATACCTAAGGTCTCCATCAGTAACGACAGCACCCTTCATTACACCGCCTCCACCTCCCAGACCTTTTCCCAATCATATGGGTTTTCCAGATTTTCAATCTCCCATCTACTATGTTACTGCACCTCAGCATCCCGAGTCTCTCAGAGGCATCCCTTTTGCCTCACATCCTGCTCCTACTCAACAAGTAATGTTACTTCCTGCAGCTGATCCTCAGTGTGCTATGCTGCTAAAACAAATAGATTATTATTTTAGCCCAGAAAATTTGTGTAAAGATTTATACTTGAGGCAGAATATGGATGAGCAAGGCTGGGTTCCTATATCTTTGATTGCTGGCTTCAATAGGGTGAGGCAATTGACTAACAGTATACAGTACATAATAGACACTGTACAGCTATCGAGTGTTGTGGAGGTGCAGGGTGATAAAATAAGGAAGCGTAATGATTGGATGGCATGGGTGCTTCACCCGGTCGATAGCATGGCTCCTGCTTCTGGCATGCAGTTCCCAGGAGCCAATTTCGATGGTCTGGCAGCTCGCTTCGACAATATTTACTTGAACTTGGATGCTCCTGATAGCGCGGGGCCTGATAAAAGTGAGGCGGCTTTTGCAAGATCGTCCTCCGCAAAACTAAATGGCATGAGAAATTCCGAGGGTGGTGATGGTACTCAAGCAGGCTCATACTCTGATCGCATTTGGAACATGAGAACACTGCTTAGAAGTGACACTATGTAAGTTCCATTTGCCCGGGTATGAAATCAATTGCATAATGCTTCGTCCAAGTGTAGTGTCCCGAAACATTATTCGAATGACCTGGCAAAACTCTATTGCAGAATTACCCTCTCTATGTTTATAACGCAAGGGTGAACTTGCCACGTCACCTGGATAATGTTTATGTACTCCACATTTGGACGAAATAAAAAGTTGGTTAAATGAAAAAAAAAAAATGAAAAAACCAAAAATATAAATTAATGAAACTACCGCTGGAGCTTCCTATATACCTTTATAAATAGAAAAAGAAAAAAAAACTGGTGAAGAGATACGAAAGCTGTCTGGAAGTGGGAGAGAGTTTTATACACACAATGTATAATTAGTCTTCTTACATAATGCTTATAATTTTGGCATGCATAATACTATCAAGTCTGGCTAATGTGCTGAATTTATAAGAAGAATGTATAAGATTTCTTATACATTATTGTACGTATAAAACTTTTCCTTGCCCCTCTCGGATGCTTGTGGGGATATTCGGCTCTTTTCAGGAAGAAAAAGTGCCGAGTTTTAAAGAAGGGAAATGGAGTTGGCTGCAGTCTGGTGTGCTTTTGTCAAGTATTTTATTGCCTTTCTATGCTGAAATTTACTCCCAAGTTATTTTTC

Network for GWHGAAEX012908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05383.16	La	383	437	1.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	182.540
SRP064423	SRR2545915	Juvenile tuber	174.990
SRP108465	SRR5643513	five period of Gastrodia elata	80.630
	SRR5643514	five period of Gastrodia elata	56.780
	SRR5643515	five period of Gastrodia elata	64.100
	SRR5643524	five period of Gastrodia elata	53.620
	SRR5643525	five period of Gastrodia elata	133.390
	SRR5643528	five period of Gastrodia elata	87.160
	SRR5643658	five period of Gastrodia elata	106.650
	SRR5643659	five period of Gastrodia elata	135.320
	SRR5643660	five period of Gastrodia elata	173.230
	SRR5643661	five period of Gastrodia elata	161.800
	SRR5643662	five period of Gastrodia elata	204.980
	SRR5643663	five period of Gastrodia elata	177.860
	SRR5643664	five period of Gastrodia elata	249.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	139.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	109.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	130.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	171.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	234.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	287.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	181.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	235.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	113.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	146.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	82.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	82.890
SRP279888	Gastro	Gastrodia elata tuber	120.11
	Juven	Juvenile tuber	75.99
	Mother_Gastro	Mother tuber of Gastrodia elata	29.06
	Mother_Juven	Mother tuber of Juvenile	42.69