Detail information of GWHGAAEX012909/evm.TU.scaffold_48.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302391923|ref|YP_003827743.1| | 4.00E-92 | DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM 5501] |
| KOG | KOG0217 | 0 | Mismatch repair ATPase MSH6 (MutS family) |
| nr | gi|743823735|ref|XP_010932609.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6 [Elaeis guineensis] |
| Swissprot | tr|O04716|MSH6_ARATH | 0 | DNA mismatch repair protein MSH6 |
| trEMBL | tr|M0T1C6|M0T1C6_MUSAM | 0 | DNA mismatch repair protein MSH6 {ECO:0000256|PIRNR:PIRNR037677} |
| TAIR | AT4G02070 | 0 | MUTS homolog 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 756427 | 801076 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01624.19 | MutS_I | 337 | 450 | 3.10E-34 |
| PF05188.16 | MutS_II | 460 | 567 | 7.70E-09 |
| PF05192.17 | MutS_III | 661 | 975 | 1.30E-28 |
| PF05190.17 | MutS_IV | 844 | 934 | 2.70E-12 |
| PF00488.20 | MutS_V | 1041 | 1228 | 1.10E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08737 | MSH6 | Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.200 |
| SRR2545915 | Juvenile tuber | 7.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.640 |
| SRR5643514 | five period of Gastrodia elata | 8.090 | |
| SRR5643515 | five period of Gastrodia elata | 5.650 | |
| SRR5643524 | five period of Gastrodia elata | 7.340 | |
| SRR5643525 | five period of Gastrodia elata | 3.740 | |
| SRR5643528 | five period of Gastrodia elata | 3.470 | |
| SRR5643658 | five period of Gastrodia elata | 5.710 | |
| SRR5643659 | five period of Gastrodia elata | 13.300 | |
| SRR5643660 | five period of Gastrodia elata | 9.830 | |
| SRR5643661 | five period of Gastrodia elata | 14.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.000 | |
| SRR5643663 | five period of Gastrodia elata | 6.940 | |
| SRR5643664 | five period of Gastrodia elata | 8.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.62 |
| Juven | Juvenile tuber | 9.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.55 | |
| Mother_Juven | Mother tuber of Juvenile | 7.12 |