Detail information of GWHGAAEX012914/evm.TU.scaffold_48.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 4.00E-10 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672157721|ref|XP_008798580.1| | 0 | PREDICTED: U-box domain-containing protein 16 [Phoenix dactylifera] |
| Swissprot | tr|Q9LZW3|PUB16_ARATH | 0 | U-box domain-containing protein 16 |
| trEMBL | tr|A2Y5R1|A2Y5R1_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAY98421.1} |
| TAIR | AT5G01830 | 0 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 966907 | 969438 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 279 | 350 | 2.60E-20 |
| PF00514.22 | Arm | 412 | 450 | 1.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.390 |
| SRR2545915 | Juvenile tuber | 9.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.110 |
| SRR5643514 | five period of Gastrodia elata | 27.690 | |
| SRR5643515 | five period of Gastrodia elata | 86.740 | |
| SRR5643524 | five period of Gastrodia elata | 21.150 | |
| SRR5643525 | five period of Gastrodia elata | 43.560 | |
| SRR5643528 | five period of Gastrodia elata | 24.540 | |
| SRR5643658 | five period of Gastrodia elata | 28.860 | |
| SRR5643659 | five period of Gastrodia elata | 49.210 | |
| SRR5643660 | five period of Gastrodia elata | 14.010 | |
| SRR5643661 | five period of Gastrodia elata | 24.530 | |
| SRR5643662 | five period of Gastrodia elata | 63.900 | |
| SRR5643663 | five period of Gastrodia elata | 37.570 | |
| SRR5643664 | five period of Gastrodia elata | 308.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 178.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 201.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 143.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 132.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 128.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 153.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 226.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 161.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 74.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 230.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 180.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 180.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.34 |
| Juven | Juvenile tuber | 21.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 139.78 | |
| Mother_Juven | Mother tuber of Juvenile | 34.65 |