Detail information of GWHGAAEX012915/evm.TU.scaffold_48.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30051.00E-55GIY-YIG type nuclease
nrgi|743788609|ref|XP_010922708.1|8.93E-108PREDICTED: structure-specific endonuclease subunit SLX1 homolog 2 [Elaeis guineensis]
trEMBLtr|F6GUC5|F6GUC5_VITVI8.00E-93Structure-specific endonuclease subunit SLX1 homolog {ECO:0000256|HAMAP-Rule:MF_03100}
TAIRAT2G303501.00E-55Excinuclease ABC, C subunit, N-terminal

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000499998091025634-
Transcript Sequence

Network for GWHGAAEX012915

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01541.23GIY-YIG441184.30E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15078SLX1 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0017108Molecular Function5'-flap endonuclease activity
GO:0033557Cellular ComponentSlx1-Slx4 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.200
SRR2545915Juvenile tuber12.600
SRP108465SRR5643513five period of Gastrodia elata5.720
SRR5643514five period of Gastrodia elata5.790
SRR5643515five period of Gastrodia elata6.950
SRR5643524five period of Gastrodia elata6.110
SRR5643525five period of Gastrodia elata7.560
SRR5643528five period of Gastrodia elata8.870
SRR5643658five period of Gastrodia elata9.330
SRR5643659five period of Gastrodia elata10.130
SRR5643660five period of Gastrodia elata8.070
SRR5643661five period of Gastrodia elata10.990
SRR5643662five period of Gastrodia elata10.370
SRR5643663five period of Gastrodia elata11.260
SRR5643664five period of Gastrodia elata8.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.630
SRR6049655Rhizomagastrodiae_C368-T10_good_114.010
SRR6049656Rhizomagastrodiae_C368-T07_good_120.470
SRR6049657Rhizomagastrodiae_C368-T07_good_119.160
SRR6049658Rhizomagastrodiae_C368-T04_good_128.730
SRR6049659Rhizomagastrodiae_C368-T04_good_133.110
SRR6049660Rhizomagastrodiae_C368-T01_good_127.360
SRR6049661Rhizomagastrodiae_C368-T04_good_130.410
SRR6049662Rhizomagastrodiae_C368-T01_good_125.510
SRR6049663Rhizomagastrodiae_C368-T01_good_126.350
SRR6049664Rhizomagastrodiae_C368-T10_good_115.560
SRR6049665Rhizomagastrodiae_C368-T10_good_115.560
SRP279888GastroGastrodia elata tuber 18.96
JuvenJuvenile tuber7.98
Mother_GastroMother tuber of Gastrodia elata 18.72
Mother_JuvenMother tuber of Juvenile 8.05