Detail information of GWHGAAEX012917/evm.TU.scaffold_48.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672160156|ref|XP_008799853.1|2.80E-108PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Phoenix dactylifera]
Swissprottr|Q8GYP3|RDM4_ARATH6.00E-64RNA-directed DNA methylation 4
trEMBLtr|W9S6C6|W9S6C6_9ROSA5.00E-87Uncharacterized protein {ECO:0000313|EMBL:EXC28451.1}
TAIRAT2G302801.00E-40RNA-directed DNA methylation 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004911359521162100+
Transcript Sequence

Network for GWHGAAEX012917

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08574.9Iwr12362975.40E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.110
SRR2545915Juvenile tuber80.550
SRP108465SRR5643513five period of Gastrodia elata25.030
SRR5643514five period of Gastrodia elata25.550
SRR5643515five period of Gastrodia elata25.910
SRR5643524five period of Gastrodia elata23.680
SRR5643525five period of Gastrodia elata18.440
SRR5643528five period of Gastrodia elata14.470
SRR5643658five period of Gastrodia elata21.290
SRR5643659five period of Gastrodia elata30.110
SRR5643660five period of Gastrodia elata28.820
SRR5643661five period of Gastrodia elata26.190
SRR5643662five period of Gastrodia elata25.170
SRR5643663five period of Gastrodia elata28.390
SRR5643664five period of Gastrodia elata31.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.860
SRR6049655Rhizomagastrodiae_C368-T10_good_123.730
SRR6049656Rhizomagastrodiae_C368-T07_good_143.400
SRR6049657Rhizomagastrodiae_C368-T07_good_145.190
SRR6049658Rhizomagastrodiae_C368-T04_good_155.960
SRR6049659Rhizomagastrodiae_C368-T04_good_154.140
SRR6049660Rhizomagastrodiae_C368-T01_good_148.100
SRR6049661Rhizomagastrodiae_C368-T04_good_150.570
SRR6049662Rhizomagastrodiae_C368-T01_good_140.860
SRR6049663Rhizomagastrodiae_C368-T01_good_142.470
SRR6049664Rhizomagastrodiae_C368-T10_good_125.480
SRR6049665Rhizomagastrodiae_C368-T10_good_125.480
SRP279888GastroGastrodia elata tuber 37.15
JuvenJuvenile tuber43.27
Mother_GastroMother tuber of Gastrodia elata 30.65
Mother_JuvenMother tuber of Juvenile 30.90