Gene detail

Detail information of GWHGAAEX012918/evm.TU.scaffold_48.34

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672160125\|ref\|XP_008799837.1\|	2.32E-73	PREDICTED: protein LURP-one-related 15-like [Phoenix dactylifera]
Swissprot	tr\|Q9LZX1\|LOR15_ARATH	5.00E-55	Protein LURP-one-related 15
trEMBL	tr\|K4D3X6\|K4D3X6_SOLLC	2.00E-68	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g085420.1.1}
TAIR	AT5G01750	2.00E-54	Protein of unknown function (DUF567)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	1172072	1173789	+

Transcript Sequence
>GWHTAAEX012918 TATTAAGTAAAGTATTATATACTTAACATTTTTGAACAGGTCTTAAACTTAATTTTATAATAACAAAATGCTTTCCAATATATATTATGTGCCTACTTCTTACTTAGGCAACAAAAGCGGGCAAGCCGTGCCTGTGAAGTAATCTAAAGAGTGCCGTTAGACATCCTTAACTATTCCTTATTCTCCAACCAGTTTTTAAATAATTAAAAAATAATACCAGAACCTTCCATTAAGCAAGAACTGATCCATGGAAATCAACCCAATCTGCATGCAGTTGGCACCATTGCCTCCGTCCGGCCCGGCTGGCTGGGTGGCAGTCATTGGAGGGCTGTTCTGCGCTCCATACATCGTCGAGCTGACGGTGTCGAGGGGCCGCAGCAGCTTTCCGCTCTGCAAGTACGAAGTGACGGACCTTAACGGTAACATTCAATTCAAAGCCAAGCGAAAATCTGTTTTCAGTTTCCGCGACCGCCGCGTCCTCCTCGATGCCTACGGAAATGTACTCCTCTCTATGGAGCAGAAGGTATTTTCTCTGCGTAGGAGATGGAAAGTTTTTAGAGGAGACAGTTTCAGCCCTGACGATCTCTTGTTCAGCGTTCAAAAGTCATGCCTTCTGCAGTTCACCATGGAGCTTGATGTGTTTTTGGCTTCAAATACTGCTGGAAATATGTGTGATTTCAGGATCAAGGGAAGCTTCCAAAACAGGTCCTGCGAAATTTTCCTAAGGGATTCTAGAACTGTTATTGCTCGAATGACTCGTGTGTACAGCTTAAATAACATGCTTTTGGGGAAAGATTCCTTTGCAGTGACGATATACCCAAACGTGGATTATGCCTTCGTTGTTGCTCTTATTGTGATTTTTGAAGAGATTGTCATACACAACCAGCAAGAAACGATCACCATTACAAGGCATGAAGGTTATAGGCTGGAATTCCATTCTACTTAGCTTTTTTTTTGTTGTTGTTGTTTTGCGAGAAATATTATGTTTATCTATTTTGATTATCTGCTTGTAGCGTGCGTTGTTCTGTCTGCATTAAATCAGCAATGTTCTTTTTTTGCATGATTGAGATATTATTTTAATAGCAATTATTCAATTAAGTTATGTGAAAGAGTGCATTGCAATTGTAGTTGTTATTTTTATAGAATTTCATCCATTTTTCCTACAACTTTTGGCATCGGCGTAAGATTTGTTTGGTTTTACTGTCGTAAAGGGTGACTGCTGTTCATAAATAAATTAGAAAAAAAAGACCAGATGTTGCATTAGGCTGTTCACAGAGAACATAGACACAGTTGCTGTTTGGTTCAAGAAAAACAATAGTCTAATGTTATGTGCAGCATATAAAAAAGGGAACAGGTGAGGAAATTTGTTGCCGAGTTTGAAGTATTTTGGAGAAAAAAATCTGACAGAAGATAGTATACGCTCTAAGCTATCTGCTCAGAAACAAGCTCTGAGGAACAGGTGGAGCAAAAGGAGATGCATCACACCGGCTACAAATTTAAGGTGGCTCATTTTGGGCTATCCACCTGCTTTGAGATCTCTATTCTCTCCAA

Network for GWHGAAEX012918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04525.11	LOR	25	204	1.00E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.630
SRP064423	SRR2545915	Juvenile tuber	5.900
SRP108465	SRR5643513	five period of Gastrodia elata	6.900
	SRR5643514	five period of Gastrodia elata	11.690
	SRR5643515	five period of Gastrodia elata	9.730
	SRR5643524	five period of Gastrodia elata	10.100
	SRR5643525	five period of Gastrodia elata	4.790
	SRR5643528	five period of Gastrodia elata	5.480
	SRR5643658	five period of Gastrodia elata	4.770
	SRR5643659	five period of Gastrodia elata	7.160
	SRR5643660	five period of Gastrodia elata	6.240
	SRR5643661	five period of Gastrodia elata	7.360
	SRR5643662	five period of Gastrodia elata	8.160
	SRR5643663	five period of Gastrodia elata	8.010
	SRR5643664	five period of Gastrodia elata	7.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.340
SRP279888	Gastro	Gastrodia elata tuber	6.94
	Juven	Juvenile tuber	4.36
	Mother_Gastro	Mother tuber of Gastrodia elata	10.82
	Mother_Juven	Mother tuber of Juvenile	7.79