Detail information of GWHGAAEX012929/evm.TU.scaffold_48.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672171732|ref|XP_008805940.1|2.17E-155PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4 [Phoenix dactylifera]
Swissprottr|Q8RWJ7|SHH2_ARATH5.00E-115Protein SAWADEE HOMEODOMAIN HOMOLOG 2
trEMBLtr|M0SQ08|M0SQ08_MUSAM7.00E-152Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18450_001}
TAIRAT3G183801.00E-94sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004915384771600851+
Transcript Sequence

Network for GWHGAAEX012929

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00046.28Homeobox13752.10E-06
PF16719.4SAWADEE1172446.90E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-other

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.950
SRR2545915Juvenile tuber9.310
SRP108465SRR5643513five period of Gastrodia elata4.100
SRR5643514five period of Gastrodia elata4.110
SRR5643515five period of Gastrodia elata4.040
SRR5643524five period of Gastrodia elata4.270
SRR5643525five period of Gastrodia elata4.200
SRR5643528five period of Gastrodia elata4.310
SRR5643658five period of Gastrodia elata4.580
SRR5643659five period of Gastrodia elata6.270
SRR5643660five period of Gastrodia elata6.930
SRR5643661five period of Gastrodia elata5.570
SRR5643662five period of Gastrodia elata5.570
SRR5643663five period of Gastrodia elata4.750
SRR5643664five period of Gastrodia elata6.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.370
SRR6049655Rhizomagastrodiae_C368-T10_good_14.890
SRR6049656Rhizomagastrodiae_C368-T07_good_16.150
SRR6049657Rhizomagastrodiae_C368-T07_good_18.260
SRR6049658Rhizomagastrodiae_C368-T04_good_16.990
SRR6049659Rhizomagastrodiae_C368-T04_good_110.920
SRR6049660Rhizomagastrodiae_C368-T01_good_17.850
SRR6049661Rhizomagastrodiae_C368-T04_good_19.230
SRR6049662Rhizomagastrodiae_C368-T01_good_16.360
SRR6049663Rhizomagastrodiae_C368-T01_good_16.740
SRR6049664Rhizomagastrodiae_C368-T10_good_15.130
SRR6049665Rhizomagastrodiae_C368-T10_good_15.130
SRP279888GastroGastrodia elata tuber 8.07
JuvenJuvenile tuber6.13
Mother_GastroMother tuber of Gastrodia elata 2.47
Mother_JuvenMother tuber of Juvenile 3.19