Detail information of GWHGAAEX012935/evm.TU.scaffold_48.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343087215|ref|YP_004776510.1| | 6.00E-34 | multicopper oxidase type 3 [Cyclobacterium marinum DSM 745] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|695078915|ref|XP_009386858.1| | 0 | PREDICTED: laccase-3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q941X2|LAC3_ORYSJ | 0 | Laccase-3 (Precursor) |
| trEMBL | tr|I1NSX0|I1NSX0_ORYGL | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT5G05390 | 0 | laccase 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 1917820 | 1920985 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012935
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 42 | 156 | 1.60E-44 |
| PF00394.21 | Cu-oxidase | 168 | 318 | 9.60E-40 |
| PF07731.13 | Cu-oxidase_2 | 420 | 553 | 2.10E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.550 |
| SRR2545915 | Juvenile tuber | 3.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.630 |
| SRR5643514 | five period of Gastrodia elata | 9.450 | |
| SRR5643515 | five period of Gastrodia elata | 12.560 | |
| SRR5643524 | five period of Gastrodia elata | 8.940 | |
| SRR5643525 | five period of Gastrodia elata | 54.630 | |
| SRR5643528 | five period of Gastrodia elata | 56.410 | |
| SRR5643658 | five period of Gastrodia elata | 142.940 | |
| SRR5643659 | five period of Gastrodia elata | 4.200 | |
| SRR5643660 | five period of Gastrodia elata | 5.910 | |
| SRR5643661 | five period of Gastrodia elata | 4.980 | |
| SRR5643662 | five period of Gastrodia elata | 3.140 | |
| SRR5643663 | five period of Gastrodia elata | 5.610 | |
| SRR5643664 | five period of Gastrodia elata | 4.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.34 |
| Juven | Juvenile tuber | 0.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.88 | |
| Mother_Juven | Mother tuber of Juvenile | 4.49 |