Detail information of GWHGAAEX012936/evm.TU.scaffold_48.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4046 | 4.00E-39 | RNase MRP and P, subunit POP4/p29 |
| nr | gi|672181857|ref|XP_008811160.1| | 6.01E-105 | PREDICTED: uncharacterized protein LOC103722396 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0SQ36|M0SQ36_MUSAM | 3.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18730_001} |
| TAIR | AT2G43190 | 4.00E-39 | ribonuclease P family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 1973217 | 1990366 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012936
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01868.15 | UPF0086 | 242 | 316 | 4.90E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03538 | POP4, RPP29 | RNA transport | map03013 |
| Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0006396 | Biological Process | RNA processing |
| GO:0004540 | Molecular Function | ribonuclease activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0030677 | Cellular Component | ribonuclease P complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.690 |
| SRR2545915 | Juvenile tuber | 3.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.150 |
| SRR5643514 | five period of Gastrodia elata | 7.130 | |
| SRR5643515 | five period of Gastrodia elata | 7.020 | |
| SRR5643524 | five period of Gastrodia elata | 7.350 | |
| SRR5643525 | five period of Gastrodia elata | 3.640 | |
| SRR5643528 | five period of Gastrodia elata | 4.280 | |
| SRR5643658 | five period of Gastrodia elata | 3.990 | |
| SRR5643659 | five period of Gastrodia elata | 4.950 | |
| SRR5643660 | five period of Gastrodia elata | 5.950 | |
| SRR5643661 | five period of Gastrodia elata | 5.580 | |
| SRR5643662 | five period of Gastrodia elata | 4.860 | |
| SRR5643663 | five period of Gastrodia elata | 6.040 | |
| SRR5643664 | five period of Gastrodia elata | 5.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.82 |
| Juven | Juvenile tuber | 7.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.72 | |
| Mother_Juven | Mother tuber of Juvenile | 9.47 |