Gene detail

Detail information of GWHGAAEX012937/evm.TU.scaffold_48.64

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743788797\|ref\|XP_010922756.1\|	PREDICTED: vacuolar-sorting receptor 1-like [Elaeis guineensis]
Swissprot	tr\|P93026\|VSR1_ARATH	Vacuolar-sorting receptor 1 (Precursor)
trEMBL	tr\|M0RTR5\|M0RTR5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P19850_001}
TAIR	AT3G52850	vacuolar sorting receptor homolog 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	1999622	2012745	-

Transcript Sequence
>GWHTAAEX012937 AAAAAAGGCTCTTTACTTCCATAGTCCAACGGGAACTTGTCGTCGTTCTGTTAACGCTAGTGAAATCTTGCCGAAGGGATCAATTCGTACGTCTCTTACACTGGTAGAAATTTGAAGAGCGCCTCCTTTTCCACTTCCCTCTTTCCTTTGAATACCTGCAACCTTATTATATGGATTAACAGCAGAAGCGAAGATTTTATATGTTCATCTAACTCGATGCTGACTGAAAAAAGGTGTACAATTCGTATCAACGCACGAAGATATACGATTTTACGCTCTCAGCACAAGCTGGGCCAGTTTTCCTCGGATTAGCGGTTTTTCAAGAAGCACTTTCACCGATTTCATGGGAATAGAGGGCCCCAAATCGATGAATTTTGGAAAGAGAATGGGAAGCAAAGTGTGGTTTTTCGGTGTATGGGCTATGTTTCTATTTGGTTCGTGTCTCGGAAGATTTGTGGTGGAGAAGAACAGCTTGAAGGTGACTTCGCCGGAGAATTTGAAAGGGGTTTATGAATGCGGTACTGGAAATTTCGGCATTCCTCAGTACGGAGGGACAATGGCGGGGATTCTGGTTTATCCGAAATCTAACAGGAATGGATGCCAGAGCTTTGAGGATTCTAATATCTTTTTCAAGTCCAAGCCCGGAGGTCTTCCTACTTTTCTTCTAGTTGATAGAGGAGAGTGCTATTTTACAGAAAAATCCTGGCATGCGCAGAATGCGGGAGCTGCTGCAGTCATTGTTGTTGATGACAAGAAGGAACCTTTGATCACTATGGACATGCCCAAAGATGACAGGAGCTGGCTTGAATATACACGAAATATATCCATCCCATCTGTTCTTATTACACAAAGCCTTGGGAGCAACCTTAAGAGTGCCCTAGATAATGGTGAAATGGTAAACCTCAATTTAGATTGGAGGGAATCTTTGCCTCATCCTGATGACCGTGTGGAGTATGAGTTTTGGACAAATAGCAATGATGAATGCGGCACCAAATGTGATAGCCAATTAGATTTTGTTAGGAGTTTTAAAGGCGCTGCCCAATTACTTGAGAAAAAGGGTTACACTAAGTTCACTCCATATTATTTTTCTTGGTATTGCCCTGAAGCTTTTATTTTAAGCAAGCAGTGCAAATCACAATGTATCAACAATGGAAGATACTGTGCTCCTGATCCTGAGCATGACTTCAGCGTAGGGTATGATGGGAAGGATGTTGTGCTTCAGAATCTTCGACAGATGTGCTTGTTCAAGGTTGCAAATGCAAGTGGAAAACCTTGGTTGTGGTGGGATTATGTTTCAGATTTCTCTATTAGGTGTCCAATGAAGGACAAGAAATACACAAAGGAATGTGCTGAAGACGTGCTCAATTCACTGGGCGTTGATCTGAAGCAGGTAAGTGATTGCATGGGAGATCCCGAAGTAGATGCAGACAATCCAGTGCTGAAGGCTGACCAATTTGCTCAGGTTGGCAAAGACTCCCGTGGGAGTGTTACTATTCTCCCGACACTCATCATTAACAACCGGCAGTATAGAGGCAAGTTGGACAAGAGTGCTGTGCTTAAAGCAATCTGTTCAGGATTTCAAGAGACAACTGAACCAGCTGTGTGTTTAACTGAAGATATTGAGACAAATGAGTGTCTGGAAAACAACGGTGGGTGTTGGCGAGACACAGCTGCAAATGTTACTGCATGCAAGGATACGTTCCGTGGAAGAGTATGCGAGTGCCCTACTTTCAATGGCGTAAAATTTATTGGCGATGGTTATAAGAATTGTGATGCTTCTGGTTCGGGACGATGCGAAATTAATAATGGAGGGTGCTGGAAAGAAACTCGAGATGGCGCGACATTCTCTGCCTGTTCTAGCCTTGAAGCCAGCGGATGCAAGTGCCCTTCAGGCTTCAAGGGCGACGGAGTTAACACGTGCGAAGATGTGGATGAATGCAAAGAAAAAATTGGTTGCCGATGTCCGGATTGCAAATGTAAGAACACTTGGGGGAGCTATGAATGCAGCTGCCGCGGTGATCTTCTATACATGCTAGAGCATGATACTTGTATGAGTGTGAAGGCATCAACAGGGATAAGCTGGGTCTTCCTCTGGGTCATTTTCCTTGGCTTGGCTGTTGCTGGAGTTGGGGGATTTACTATCTACAAGTACAGGATCAGGAGCTATATGGACTCTGAGGTTCGGGCCATTATGGCGCAGTACATGCCGCTGGACAATAAAGAACCGCCGGCGAATCATATCAGCCATCCTGACATTTGAATTTTTTTTGGCATTTGGTAGAACTGCGAGCAGTGCTCATTCTTATGATGGGAGAAGTGTCCACGTTTCCTCATTTTTCTTGCTGAGGCCGGCTTTACCTATTATATACCATGTGTAAAGTCCTATTTTTATAGCAACACTATTTTTATAATGTTTTAATTTTTTGTTGGCTTTTATGTTCATAGAATGTGAATGTGGAGAGTGCAGCACTCAATAATGAATTAGATGGATATGCAAGCTTATTGTATAAT

Network for GWHGAAEX012937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	75	175	8.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.950
SRP064423	SRR2545915	Juvenile tuber	2.720
SRP108465	SRR5643513	five period of Gastrodia elata	37.140
	SRR5643514	five period of Gastrodia elata	55.900
	SRR5643515	five period of Gastrodia elata	41.970
	SRR5643524	five period of Gastrodia elata	36.890
	SRR5643525	five period of Gastrodia elata	0.900
	SRR5643528	five period of Gastrodia elata	1.230
	SRR5643658	five period of Gastrodia elata	0.740
	SRR5643659	five period of Gastrodia elata	2.030
	SRR5643660	five period of Gastrodia elata	2.640
	SRR5643661	five period of Gastrodia elata	3.190
	SRR5643662	five period of Gastrodia elata	2.360
	SRR5643663	five period of Gastrodia elata	2.110
	SRR5643664	five period of Gastrodia elata	2.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	80.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	73.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	142.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	142.740
SRP279888	Gastro	Gastrodia elata tuber	2.36
	Juven	Juvenile tuber	2.59
	Mother_Gastro	Mother tuber of Gastrodia elata	11.31
	Mother_Juven	Mother tuber of Juvenile	3.77