Gene detail

Detail information of GWHGAAEX012938/evm.TU.scaffold_48.66

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743788797\|ref\|XP_010922756.1\|	PREDICTED: vacuolar-sorting receptor 1-like [Elaeis guineensis]
Swissprot	tr\|P93026\|VSR1_ARATH	Vacuolar-sorting receptor 1 (Precursor)
trEMBL	tr\|M0RTR5\|M0RTR5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P19850_001}
TAIR	AT3G52850	vacuolar sorting receptor homolog 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	2015720	2077977	+

Transcript Sequence
>GWHTAAEX012938 CATCGAAAGCCGCCGAGTTGGAGGAGTTCGCTGATCGCCTCCTTTTTCACTTCCCTCTTTCATCTGCATTCCTGCAACGTTGCATGGACATTTTGCAACATGAAAAATACAATTTTCTAACATGGACTCGTTCCACAGCTGGCAGCCTATGGCCGGCGGGGTTTCTTGGATTTGACGTTCTCAACAATACTATCATCAATTTCTAGGATTTTATTTTTGGAGTCGAATGGATGAAATTGTGACCAGAATGAGTGGCGAGGTTTGGTTTTGTGTATCGGCTATGCTTCTACTTGGTACGTGTCGCGCAAGATTAGTGGCGGAGAAGAATATCTTGAAGGTGATGTCGCCAGACTCTTTGAAAGGTGCTTATGACTGCGGTACTGGGAAAATCGGCATTCCTCTGTATGGAGGGACAATGGCGGGGATTTTAGCCTATCCGACATCAAATAGGAATGCATGTAAGAGCTTTGAGGAGTTCTATATCTCTTTCAAGGCCAAGCCAGGAGGGCTTCCTACATTTCTTCTGGTGGATAGCGGAGATTGCTATTTTACAACAAAAGCATGGAATGCTCAGAATGCAGGAGCTGTTGCAATCATTGTTGTTGATGACAATGAGAATAACTTCACTATGAATATGCCTAAAGAAAATAGTGGCTGGCATGATTATTCAAGAAATGTATCCATCCCATCTGCTTTTATAAAGCAAAGCTTGGGGGATAGCCTCAAGAAAGCCATAGATAATGGTGAAATGGTAAACCTCAATATAAATTGGAGGGAATCCTTTCCTCATACTTATGACCGTGTGGAGTATGAGTTTTGGACAAATAGCAATGATGAATGTGGCCCCAGATGTGATAGGCAAATAAACTTTATTAGGACTTTTAAAGGTGCAGCACAACTACTTGAGAAAAAGGGTTACACCCGGTTCATACCACACTACATCACTTGGTATTGCCTTCTTATTTCAAGCAAGCAGTGCAAATCAGAATGCATCAACCATGGAAGATACTGTTCCCCTGATCCTGAACATGACTTCAGCATAGGGTATGATGGGAGGGATGTTGTGATCCAAAATCTTCGACAAGTCTGTTTGTTTAAGGTTGCCAATGAAAGTGGAAAGCCATGGCTATGGTGGGATTATGCATCTGATTTCGCCCTTAGGTGTCCAATGAAGGACATGAAATACACAGAAGAATGTGCTGAAGAAGTGATTAGCTCTCTGGGTGTTGATCTGAAGAAGATAAATGATTGTATTGGAGATCCTGAGGCGGATGAAGACAATCCAGTACTGAAGGCTGAACAAAATGCTCAGAATGGCAAAGGCTCACGTGAACATGTGAGCATCCTGGCAACACTTGTCATTAATAATCGGCTGTACAGAGGAAAGTTGGACAAGGGTGCAGTACTTAATGCTATCTGTTCTGAGTTTGAAGAGACAACAGAGCCGACTATATGTCTGACTGAAGATATCGAAACCAATGAATGCTTGGAAAACAACGGTGGATGCTGGCTAGATAGGGTTACTAATATTACTGCATGTAAGGATACTGTCCGTGGAAGATTATGTAAATGCCCTACTGTCAATGGTGTAAAGTTTGTTGGTGATGGGTATAAGTATTGTGAAGCTTCAGGACCTCGGCGCTGTGAAATTAATAATGGCGGGTGTTGGAAAGAAAATCGAGATGGCTTGACATTCTCTGCCTGTTCTGGACATGAAGCCAATGGTTGCAAATGCCCTCCAGGTTTCAAGGGTGATGGAGTCCATGTGTGCGAAGACGTGGATGAATGTAAAGAAATGAATGGTTGCCAATGTCGAAATTGCAAATGTAAGAACACTTGGGGAAGCTATGAATGCAGCTGCCGTGGTGATCTTCTATACATGCGTGAACATGATTTATGTATCAGTAAGAGGGCATCAACAGAGATTACCTGGATGTTCTTGTTGGCAATATTACTTGCTTTGGCTGTTGCTGGAGTTGTAGGATATGCACTTTATATCTATTGGATTCGGAGGCATTGGCGTTCGGAGATTCGTTCTTTTATGGTACAATACATGCCACTGGAGAATCAGTGGAGAAGCCCCGACGATACTGCTGACATTTGAATATCTGATTTTAAACGATTTTAAGGTTTTGTATATTTAAATTAAATAATAATTTGTTTCTCGCTTTTGATTATGCATTTGAAAAATAATTTGTCTTAATCAAATTTGAATATGAACATGCCTATTATTCATCTACAAGAAAATACTTTATTTTCCTAGTTAATTTTCATGGCTTAGATTTAAATTTGACTATGAATGATGTTTTAGCTCAGGTGTTAAGGCTCAGGATTTGTTATCAAAAGTGAAGCTACTTCATATTTAAAATTCACTCGATTTAAAAAAGAAAAAATAGTATAATTCATTAAAATTAAGTGATGGACAAGATTCTT

Network for GWHGAAEX012938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	98	166	7.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.640
SRP064423	SRR2545915	Juvenile tuber	3.030
SRP108465	SRR5643513	five period of Gastrodia elata	4.720
	SRR5643514	five period of Gastrodia elata	8.430
	SRR5643515	five period of Gastrodia elata	5.970
	SRR5643524	five period of Gastrodia elata	7.690
	SRR5643525	five period of Gastrodia elata	2.720
	SRR5643528	five period of Gastrodia elata	2.140
	SRR5643658	five period of Gastrodia elata	1.610
	SRR5643659	five period of Gastrodia elata	2.620
	SRR5643660	five period of Gastrodia elata	3.670
	SRR5643661	five period of Gastrodia elata	2.880
	SRR5643662	five period of Gastrodia elata	2.930
	SRR5643663	five period of Gastrodia elata	2.740
	SRR5643664	five period of Gastrodia elata	2.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.420
SRP279888	Gastro	Gastrodia elata tuber	4.41
	Juven	Juvenile tuber	3.04
	Mother_Gastro	Mother tuber of Gastrodia elata	4.45
	Mother_Juven	Mother tuber of Juvenile	2.95