Gene detail

Detail information of GWHGAAEX012939/evm.TU.scaffold_48.68

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672130003\|ref\|XP_008788525.1\|	9.62E-35	PREDICTED: probable WRKY transcription factor 70 [Phoenix dactylifera]
Swissprot	tr\|Q9LY00\|WRK70_ARATH	3.00E-26	Probable WRKY transcription factor 70
trEMBL	tr\|M0SWH8\|M0SWH8_MUSAM	5.00E-31	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P07490_001}
TAIR	AT3G56400	9.00E-26	WRKY DNA-binding protein 70

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	2078051	2082890	-

Transcript Sequence
>GWHTAAEX012939 TTTACACCTGAAATTTTATATGCCTAACAACAAGAATTTCAGCTTTATCTAAGAAAATTTCTTTACACCCAAGCAACCAAACAGCCTCTTAAATTGACATTTTTGTTTCAGAAAGGCCTTTTGCATCTAAGAGAGCAATAAAGAAAAGCTATATCATATGCAGAACAGAATTACTGGAAGGAAGGCTGAACACAGGCTGACGTCATATGCTTACGTAAAAGGGATGACGTGCCTCTTTATATTCCAACGACTTGGCCCTTCCTCATTTCCAAGCTGCTTCTAGCTTTTCTCCCGAAGAATATATAAGTTACTCCTGAGTAGCAGCCACGGACACATTATCACATTCCCTCCCTCAATTTCCTTTGGCCTTTTTATCTGTTTCTTCTTCCCGATCAATCACTCCAAGCTGGAACAGAAATGAGCTCCTTTGAAGAAGACATGGTTGCTGTGATAGACGAGCTAACCAAAGCACTGACCAACCTGCTTCTCACTGATCCTCCAGAGCAGTTCAGAGCGAGGCTCCTCCTCGAAGGCATCATGAGCGCCATCTCCAAAGTAATCGCAGCTCTGGAATCTGGCTTAAAGCAGCAAGACAGCATGGAGCCTCAAGTCCTCTCCCCTTCCTTTGATGTCACAAGCAAGGCTTCTGCAGAAAAGGGAGGGAATCAGAGAATAAGGACAAAAGCCAACAGGAAAAGAGGAGCCTGGGCAAGGGTTACTTCAAGAGCCATTGATGATGGATACATATGGAGAAAGTACGGGCAGAAAAACATCTTTAGTGCCAAATATCCAAGAAGCTACTTCAGATGCACATACAAGTATGGCAGAGGCTGCAAAGCCACGAGGCAGGTGCAGAAGTCGGAAGAAGACCCCTTCTTATACGTGATCACTTACTTTGGGGAGCACTCCTGCGAAGAAGAGGCGAAGGAGAACCTTTCCAGATCCAGGGAACCATGTGTTATCAGTTTTGAATCGAATAAAGTCAGCGGGATCAGCAACCCAGGGATTCCCTTCTCCTCGTTGCCATCTAACAAGCAGGAAATTGAGGAAGAGGTTGTGAGCAACCTTACCTCAGTCGATTCACTTTCAGACTGCCTAGAACCGCCGGAGAGGGAGCTGCAGAAGCCGTCCTCGATGGGTGATTCATTAAATGGATTGAACTCCTCCATCGCAAGCTGTGATCTGGAGTTTATGGATATTGAGAATTTTTTAAGTTTGGATCCAATTGAGTTTACATGGCAGGCTAATGAGGATGCCGCAGTTGCTGTGACTGGAATTTAAAGAGATTGTTGAGAAGAGAGTTTTTACATCTTCTTTTCTAGTATTGGAGAGGGAATATGTTGTATAATTTTAGCATCAAAACAGTGAATGTAAAGAATAGCTGCTGCACTGGTGCTAGCCAGGATCCCCCCTGATAAGGTCTGATGATGTAGAAACCTTAGCATAATGGTATATTTGAGCAATTGTTGCTTTTACTTCTAGAAGAGTTGAATTCACAACCTCTGCTGTACTTCTGCTCTTATTCAATTCGCTACTATAAGCCCTAAACATCAGACTAAGATGCAAGCTTTTCTGTGAAGATACTGAGTATCCATTTGAAGAAGAAAGCCAAGAAACAATTGGAATTCGTTGTAGCATCATATAAATATAGTATACAGAAATCATATCCGTTATTACTCTAGGAGGACAAATCAATTACATTAATTCAAACTCTTCAACAAGTTTCATAGTTCGCTGAAGGTTTTTTAGGCAAGCACAGGTTTCCCGAGTCAATGCAGGAGATAAACCGCTAGAATAAAAAATTCGAACTTTATCCACAACCTCAATCCAACTGCAACCCGGATTCTTGAGCATCCCTGTTTCTTTCATATGAATCCTAATGCCTGCAGCCTTCTCAGTCAAGCCCATCTCCCTGTAAAAGTTTGCAACTTGAGTGCAGCTTCCACTCTCTCGAGGACTTCCTTTAATCAGATGATAACTTGCTATTTCTCCAAGGTGTGAGACCCCGTGTGATCTGCAAGCACTTAAAAAACACAACCATATGCTCTGGCCGGGCTCTACGGGCATGGCTTCAATGAAGCAATAGGCATCATCCAGCCGACCCGCACGACCGTAAAGATCCACCATGTTTGCAAAATGCTCCATTGTGGGCTTTATGCTGTAATCAGTTATCATTGAATCGAAGAATTTACGCCCTTGTTCTACTAAACCGGAATGGCTACAAGATGAGATCAGAGAGAGGAATGAGGTTCCATCTGGTACTATTTTCGATTGTTTCATCCTGTCGAACAAATCGATTGCCTTCAAGCAGTACCCATTAGAGCCATACCCAGCTATCATTGCATTCCAAGCAACTAGACTTCTTACAGGCATTCTGTCAAAGGTAAACTGCGCATATCTCATGCATCCACATTTCATGTACATGTCTATGAATGAGTTCCCAACATACTCATCACATAAAATCCCATTTCTTACTAGATAACCATGTATCATCTTCCCTTTAGCAAAGACTGCATGGGTGGACACTGAAACAAGAACACTGGTTATAGAAACAGAATCAGGAAGCAAGCCATTCCGAATTATTCCAATAAAAGCATTGATTGATTCTTCAAACAGGCCATTCAGGCTGTACCCCGATATCATAGAATTCCAAACTACAAGGCTCTTTTTTTCAATGGCATCGAAAACGCCTGCTGCTAATAAAGGCAAGCCACACTTGGAATACATGCTAATCAAAGCGCTCCCCACAAATGTGTCTGACACTGAACAATTCTTTATAGCCATTGAATGTATCCCATGCCCAAGTTGAAGCCAGGCCATGGCAGTGCAGGCGGACAGGATGCTTGCAAAAATTCCAGAATCAGGATTAACTCCTTCGGCACGTAACCGGTTGAATGTCTGCAAAGCTTGCTCATAATGCTTATTCTGGCAAAAACCAGCAATCATAGCACCCAACAAGACAACATCCCATTCCTTTACTGAATCGAAAAGCAATGCGGCGTCCTCCACATCCCCATCTCTCATGTACATGCATATCAAACTACTCGTCACAGCCTCGTTGCTTGATTCTTGCATCTTTATCAACAACCCATGAATTTTTCTTCCAAACTCTCGCCAGCCGATGACACTGCAAGCAGACAGCACATTTGTTATTGTGATCGAATCCGGCTTGACATCGTTAGCCATCATTTGATCGTAAAGACCCAAAGCTTCAGAAACACGAGAATTGCTGAAAAAAGCTGATATCATCGAATTCCACAGCTGAACTCCCTTGATGGGCACAGAATCAAAGAGTCTAAAGGCCTCATCCACAAACCCAACACGAGCATAGAAAGTAATTAAAGAAGTACAAGCATATGGATGGGGTTCGAATCCCATCTTAACAGCGCAACAATGAACCCCCTGGCCGAATCCAACGGCACCCGCCATCGAGCAAGAAACAAGAACGCACGATGCCGTTTCTGGCTGGACGGCGAATCGCTCGAACATCATGAGCACAAAGAGCTCCAAACTCCTCTCCCATAGGCCGCTATGACATAGGCCGGAGATGATGTCGTTATACATGGAAATGCTCTTGTCAAGCACCCCGTCAAAAACGTCGAGAGATCTATGCGGCACCCCAGACCTCGAATATGCATGCATCAATGCCGTGACAACAAAGCTGTCACTGCACATTGCATTCCTAACAAGAAATCCATGAACTTGTTGAGCTTGCTTGAGGCCCAATCTGCCATCATCGATGCAGGCCTTGAGAAGAATGGTGAGCGAGTAGCAATCGGGGCGGAAACCATGGAGCTGCATTTGGCGGAGATATGTGATACCTTGGCGATAATGGCGCTGATGGAAATAGCCGGAGATGAGCGAGTTCCACACGATAGAGTCTGTTTGAGGCAATTCGTCGAACACGTAGTGGGCGTCTGAGAGATGGCCGCATTTGGAGTAGAGCGAAATGAGGGAGCTGGTGATGTGGAGATCGAAGAGGAGACCGAAGCGGATGACAATGGCGTGGATTCTCCTGCCATGGGAAATGTCGAGGCGGGAAGCGCAGTTTTTGAGAAGAGAAGGGATAGTGAATTTGCTCACTTTGAAGTTGTACTCGTGGAAGAGGCGGGGATTGAGGAAATCAAGTTTAGGGTTTGACAGTCTAGTGGCAAAAAATTGGATTCGACAGTTTGTTCTGAGGGTAGAAGATGAACGCATCCAGATAGGGTTTGGGTCAGCAATATACCCTTAACATACAGATAAAGATCAAGATTAAAATATGATGAATACATAAATTCTTATTTCTTAAATTCTAAAAGCTTTTGTCCTAATATGTCCAAATATTTATATATATTGTGAATAATTTTAATTGAATTACTAGTTAAATAAATTAGATGAATTAAACTAGTTAAATAAATTTAAGGTAAAGTCAACATTTTTATTTTTCTTTAAGGCTAAAAGAAGATGAAGAGTGAAAAAATAAAAAGAAAAGCCAACGAGAAGACTGAATAGCTTCTTGGCAAAGAAGGCTAGTGAGAAAGCCTTGGTACACTCCCCTTCCCACCGCACGCAGCTCCTCTATGCCTCTCACCAGCAGGCGGACAGCCGGAGCCATACTATGCGAAGCTTTACCCCAACTCAAATTACAGGCACAAAATTGAAATTTTAACAAGTTTATAGGATTAAATAAAAA

Network for GWHGAAEX012939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	106	166	9.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.550
SRP064423	SRR2545915	Juvenile tuber	14.300
SRP108465	SRR5643513	five period of Gastrodia elata	11.150
	SRR5643514	five period of Gastrodia elata	9.750
	SRR5643515	five period of Gastrodia elata	19.160
	SRR5643524	five period of Gastrodia elata	12.570
	SRR5643525	five period of Gastrodia elata	41.690
	SRR5643528	five period of Gastrodia elata	28.460
	SRR5643658	five period of Gastrodia elata	22.690
	SRR5643659	five period of Gastrodia elata	31.330
	SRR5643660	five period of Gastrodia elata	13.420
	SRR5643661	five period of Gastrodia elata	24.780
	SRR5643662	five period of Gastrodia elata	28.080
	SRR5643663	five period of Gastrodia elata	15.390
	SRR5643664	five period of Gastrodia elata	29.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.280
SRP279888	Gastro	Gastrodia elata tuber	12.30
	Juven	Juvenile tuber	6.51
	Mother_Gastro	Mother tuber of Gastrodia elata	19.56
	Mother_Juven	Mother tuber of Juvenile	16.27