Detail information of GWHGAAEX012942/evm.TU.scaffold_48.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557693854|ref|YP_008796908.1| | 3.00E-07 | DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG1105 | 3.00E-114 | Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 |
| nr | gi|743818959|ref|XP_010931383.1| | 3.84E-143 | PREDICTED: transcription elongation factor A protein 1-like [Elaeis guineensis] |
| trEMBL | tr|M0TA09|M0TA09_MUSAM | 1.00E-138 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P25130_001} |
| TAIR | AT2G38560 | 3.00E-114 | transcript elongation factor IIS |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 2141361 | 2168123 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012942
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08711.10 | Med26 | 34 | 83 | 2.10E-09 |
| PF07500.13 | TFIIS_M | 217 | 339 | 1.10E-28 |
| PF01096.17 | TFIIS_C | 353 | 391 | 3.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | IWS1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 191.150 |
| SRR2545915 | Juvenile tuber | 381.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 117.050 |
| SRR5643514 | five period of Gastrodia elata | 97.750 | |
| SRR5643515 | five period of Gastrodia elata | 104.250 | |
| SRR5643524 | five period of Gastrodia elata | 88.220 | |
| SRR5643525 | five period of Gastrodia elata | 153.840 | |
| SRR5643528 | five period of Gastrodia elata | 95.120 | |
| SRR5643658 | five period of Gastrodia elata | 127.820 | |
| SRR5643659 | five period of Gastrodia elata | 328.300 | |
| SRR5643660 | five period of Gastrodia elata | 381.380 | |
| SRR5643661 | five period of Gastrodia elata | 386.840 | |
| SRR5643662 | five period of Gastrodia elata | 519.720 | |
| SRR5643663 | five period of Gastrodia elata | 511.510 | |
| SRR5643664 | five period of Gastrodia elata | 692.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 227.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 132.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 183.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 237.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 218.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 233.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 194.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 213.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 115.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 157.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 93.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 93.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 304.63 |
| Juven | Juvenile tuber | 160.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 72.37 | |
| Mother_Juven | Mother tuber of Juvenile | 103.74 |