Detail information of GWHGAAEX012944/evm.TU.scaffold_48.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29254.00E-52Predicted translation initiation factor related to eIF-1A
nrgi|695075067|ref|XP_009384761.1|1.35E-72PREDICTED: probable RNA-binding protein EIF1AD [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RUU1|M0RUU1_MUSAM5.00E-73Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P23610_001}
TAIRAT2G407804.00E-52Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004921873912220984+
Transcript Sequence

Network for GWHGAAEX012944

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01176.18eIF-1a22701.60E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003723Molecular FunctionRNA binding
GO:0003743Molecular Functiontranslation initiation factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.140
SRR2545915Juvenile tuber15.410
SRP108465SRR5643513five period of Gastrodia elata21.920
SRR5643514five period of Gastrodia elata22.780
SRR5643515five period of Gastrodia elata21.040
SRR5643524five period of Gastrodia elata24.380
SRR5643525five period of Gastrodia elata18.660
SRR5643528five period of Gastrodia elata21.490
SRR5643658five period of Gastrodia elata19.830
SRR5643659five period of Gastrodia elata20.850
SRR5643660five period of Gastrodia elata19.670
SRR5643661five period of Gastrodia elata18.140
SRR5643662five period of Gastrodia elata18.460
SRR5643663five period of Gastrodia elata19.990
SRR5643664five period of Gastrodia elata17.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.530
SRR6049655Rhizomagastrodiae_C368-T10_good_121.780
SRR6049656Rhizomagastrodiae_C368-T07_good_118.000
SRR6049657Rhizomagastrodiae_C368-T07_good_119.890
SRR6049658Rhizomagastrodiae_C368-T04_good_120.390
SRR6049659Rhizomagastrodiae_C368-T04_good_118.220
SRR6049660Rhizomagastrodiae_C368-T01_good_121.610
SRR6049661Rhizomagastrodiae_C368-T04_good_121.270
SRR6049662Rhizomagastrodiae_C368-T01_good_117.650
SRR6049663Rhizomagastrodiae_C368-T01_good_119.680
SRR6049664Rhizomagastrodiae_C368-T10_good_125.230
SRR6049665Rhizomagastrodiae_C368-T10_good_125.230
SRP279888GastroGastrodia elata tuber 24.51
JuvenJuvenile tuber34.70
Mother_GastroMother tuber of Gastrodia elata 23.15
Mother_JuvenMother tuber of Juvenile 37.12