Detail information of GWHGAAEX012948/evm.TU.scaffold_48.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427740192|ref|YP_007059736.1|0cysteine desulfurase-like protein, SufS subfamily [Rivularia sp. PCC 7116]
KOGKOG15490Cysteine desulfurase NFS1
nrgi|695074268|ref|XP_009384329.1|0PREDICTED: cysteine desulfurase 2, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q93WX6|NFS2_ARATH0Cysteine desulfurase 2, chloroplastic (Precursor)
trEMBLtr|M0RTR7|M0RTR7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P19870_001}
TAIRAT1G084900chloroplastic NIFS-like cysteine desulfurase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004922826422319754+
Transcript Sequence

Network for GWHGAAEX012948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.18Aminotran_5964692.80E-146
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11717sufS Metabolic pathways map01100
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0006534Biological Processcysteine metabolic process
GO:0031071Molecular Functioncysteine desulfurase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.820
SRR2545915Juvenile tuber12.080
SRP108465SRR5643513five period of Gastrodia elata14.560
SRR5643514five period of Gastrodia elata18.750
SRR5643515five period of Gastrodia elata16.670
SRR5643524five period of Gastrodia elata18.720
SRR5643525five period of Gastrodia elata7.030
SRR5643528five period of Gastrodia elata11.830
SRR5643658five period of Gastrodia elata12.960
SRR5643659five period of Gastrodia elata13.650
SRR5643660five period of Gastrodia elata10.990
SRR5643661five period of Gastrodia elata13.140
SRR5643662five period of Gastrodia elata17.870
SRR5643663five period of Gastrodia elata18.430
SRR5643664five period of Gastrodia elata14.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.470
SRR6049655Rhizomagastrodiae_C368-T10_good_123.370
SRR6049656Rhizomagastrodiae_C368-T07_good_124.390
SRR6049657Rhizomagastrodiae_C368-T07_good_117.170
SRR6049658Rhizomagastrodiae_C368-T04_good_116.460
SRR6049659Rhizomagastrodiae_C368-T04_good_116.450
SRR6049660Rhizomagastrodiae_C368-T01_good_117.100
SRR6049661Rhizomagastrodiae_C368-T04_good_118.550
SRR6049662Rhizomagastrodiae_C368-T01_good_130.000
SRR6049663Rhizomagastrodiae_C368-T01_good_123.020
SRR6049664Rhizomagastrodiae_C368-T10_good_128.460
SRR6049665Rhizomagastrodiae_C368-T10_good_128.460
SRP279888GastroGastrodia elata tuber 20.09
JuvenJuvenile tuber22.44
Mother_GastroMother tuber of Gastrodia elata 16.33
Mother_JuvenMother tuber of Juvenile 16.84