Detail information of GWHGAAEX012949/evm.TU.scaffold_48.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428210357|ref|YP_007094710.1| | 2.00E-17 | serine/threonine protein kinase [Chroococcidiopsis thermalis PCC 7203] |
| nr | gi|672166157|ref|XP_008803002.1| | 0 | PREDICTED: probable inactive receptor kinase At5g58300 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVM0|Y5830_ARATH | 0 | Probable inactive receptor kinase At5g58300 (Precursor) |
| trEMBL | tr|F6GU76|F6GU76_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43392.1} |
| TAIR | AT5G58300 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 2321015 | 2327057 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012949
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 63 | 9.70E-07 |
| PF00560.32 | LRR_1 | 186 | 208 | 0.004 |
| PF00069.24 | Pkinase | 342 | 606 | 2.10E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.010 |
| SRR2545915 | Juvenile tuber | 22.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.910 |
| SRR5643514 | five period of Gastrodia elata | 24.760 | |
| SRR5643515 | five period of Gastrodia elata | 23.810 | |
| SRR5643524 | five period of Gastrodia elata | 21.980 | |
| SRR5643525 | five period of Gastrodia elata | 24.530 | |
| SRR5643528 | five period of Gastrodia elata | 16.770 | |
| SRR5643658 | five period of Gastrodia elata | 29.490 | |
| SRR5643659 | five period of Gastrodia elata | 15.110 | |
| SRR5643660 | five period of Gastrodia elata | 14.000 | |
| SRR5643661 | five period of Gastrodia elata | 13.890 | |
| SRR5643662 | five period of Gastrodia elata | 10.180 | |
| SRR5643663 | five period of Gastrodia elata | 15.280 | |
| SRR5643664 | five period of Gastrodia elata | 11.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.60 |
| Juven | Juvenile tuber | 10.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.93 | |
| Mother_Juven | Mother tuber of Juvenile | 7.82 |