Gene detail

Detail information of GWHGAAEX012953/evm.TU.scaffold_48.84

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186683200\|ref\|YP_001866396.1\|	1.00E-11	signal transduction protein [Nostoc punctiforme PCC 73102]
KOG	KOG0027	7.00E-67	Calmodulin and related proteins (EF-Hand superfamily)
nr	gi\|672208080\|ref\|XP_008780038.1\|	5.07E-69	PREDICTED: probable calcium-binding protein CML27 [Phoenix dactylifera]
Swissprot	tr\|Q9SVG9\|CML42_ARATH	2.00E-67	Calcium-binding protein CML42
trEMBL	tr\|R0H0N0\|R0H0N0_9BRAS	1.00E-65	Uncharacterized protein {ECO:0000313\|EMBL:EOA18170.1}
TAIR	AT4G20780	7.00E-67	calmodulin like 42

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	2397263	2398698	+

Transcript Sequence
>GWHTAAEX012953 TGTAAATAGCATTTCTTTTATTATAATTTCTTGAGAAACATTGACTCAGCCAGCGCAGAGCCCTAAATGTTCCGCGTAATTGCAGCCTACAAAATCTCGGCTCTCCCCTTCTACGCCCAAAGCATTCCTCTCTCCAAAATCAGATCAGAAAGAGAAAACAAAAGATGGCCGGAGAAATCCCGCACTCGCCGCCGGCGATTCTGCCATCGATCAAGAACCAACTGACGCGCAGCTCGCCTTCCTTCCGCCTCCGATCTCCGAGCCTCAACTCGCTCCGCCTCCGCCGCGTTTTTGACCTCTTCGACCGCAACGGCGACGGTGAGATCACCGCTGATGAGCTCTGCCTGGCTCTCGATTGCCTCGGCCTCAGCGTTGACTCCACCGATCTCCGCTCCGACATCGCGTCTTTCATCCCGCCCGGCCGTCTCGGCCTCGATTTCGACTCTTTCGATTCGCTCCACCACGCCCTCGGCGACGCCCTCTTCGACCCCTCCGGCGGAGGCGCAGATGTGCAGGAGGAGGAGGAAATGAGGCAGGCTTTTAAGGTCTTTGACGAGGACGGCGATGGATTCATCTCCGCCATAGAGCTCCAGGCGGTGCTCGGAAAGCTCGGCTTGGCAGAGGGCCATGCCATAGACCGGGTTCAGCTGATGATCGGATCGGCAGACCGGAACCATGATGGACGGGTGGATTTCTTCGAGTTTAAGACTATGATGAAGACCGTTGACGTTCCCAGCGCTTGATTTTAATCGGACGGCCCTCGTCTGTTCTCGTATTCAATGATTTGGTATGACCAAATAAGTTTTCAGTAATAATACTGATGGCATGGTGACATTTATTGCTGTTATATGAATATGTTTCAGTTGGCTGAGCTGATTTTCAAATATTTTATTATATATATCTTTAGAATTTTAAATCATAGTAATTAAGATTTATTCGTCAAAATTATAATTAAAAATTAATAATTATGTATAAAAAAATATAAAATATATATTTAAATATCTTACGTATTTCTCGACATTTAAAGCATGCCGATCAAAGAGCCCCTCTTTTCTCAATGTTAGATGTTCCCATTAGTTCTTCTCACGTCTTTTAAGTTTTTTCTATAGTAAAGTCAATATTTAGTGCTTTTGACTTTTCTCACTAGATCTAATAATCAATGCTGACCCTCGGTTTTATAAAAAAAAGGCTTTAGAGGACATCAGCTGTAATCTAAGAAAAACTCATTAGCGCCGCAATCATTCGCCGATTTCTTCACCTTTCCAATCTCGCCGGCGATTCCAACGCATTTTTCCGTCGACGCTTTGATCCAAAACATTGCTCCGGCGATACAATCAATTAAAAGGAAAAAAAATCAAAGAATAAAGTCGGGCCCAGAGGTATAGAGGAACTGCAAGAGTTTAGACAAAAGTACCCCTTCCAGTTCGGCACGCTTT

Network for GWHGAAEX012953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13405.5	EF-hand_6	38	67	4.80E-08
PF13499.5	EF-hand_7	119	185	3.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.050
SRP064423	SRR2545915	Juvenile tuber	36.250
SRP108465	SRR5643513	five period of Gastrodia elata	105.760
	SRR5643514	five period of Gastrodia elata	62.730
	SRR5643515	five period of Gastrodia elata	172.530
	SRR5643524	five period of Gastrodia elata	83.250
	SRR5643525	five period of Gastrodia elata	167.090
	SRR5643528	five period of Gastrodia elata	153.990
	SRR5643658	five period of Gastrodia elata	91.650
	SRR5643659	five period of Gastrodia elata	79.060
	SRR5643660	five period of Gastrodia elata	34.580
	SRR5643661	five period of Gastrodia elata	55.140
	SRR5643662	five period of Gastrodia elata	118.490
	SRR5643663	five period of Gastrodia elata	80.380
	SRR5643664	five period of Gastrodia elata	174.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	130.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	249.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	103.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	102.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	122.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	91.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	78.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	107.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	163.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	163.650
SRP279888	Gastro	Gastrodia elata tuber	48.09
	Juven	Juvenile tuber	22.16
	Mother_Gastro	Mother tuber of Gastrodia elata	256.87
	Mother_Juven	Mother tuber of Juvenile	85.78