Detail information of GWHGAAEX012954/evm.TU.scaffold_48.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|114566751|ref|YP_753905.1| | 2.00E-23 | serine/threonine protein kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] |
| KOG | KOG0594 | 1.00E-176 | Protein kinase PCTAIRE and related kinases |
| nr | gi|743789060|ref|XP_010922825.1| | 0 | PREDICTED: cyclin-dependent kinase B1-1 [Elaeis guineensis] |
| Swissprot | tr|Q8L4P8|CKB11_ORYSJ | 0 | Cyclin-dependent kinase B1-1 |
| trEMBL | tr|H6WW33|H6WW33_PERAE | 0 | Cyclin dependent kinase B {ECO:0000313|EMBL:AEZ35252.1} |
| TAIR | AT3G54180 | 1.00E-176 | cyclin-dependent kinase B1;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 2413191 | 2436379 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012954
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 4 | 295 | 2.30E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_CDK-Pl |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.440 |
| SRR2545915 | Juvenile tuber | 2.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.820 |
| SRR5643514 | five period of Gastrodia elata | 7.120 | |
| SRR5643515 | five period of Gastrodia elata | 5.440 | |
| SRR5643524 | five period of Gastrodia elata | 5.550 | |
| SRR5643525 | five period of Gastrodia elata | 4.900 | |
| SRR5643528 | five period of Gastrodia elata | 4.470 | |
| SRR5643658 | five period of Gastrodia elata | 4.030 | |
| SRR5643659 | five period of Gastrodia elata | 2.300 | |
| SRR5643660 | five period of Gastrodia elata | 1.250 | |
| SRR5643661 | five period of Gastrodia elata | 2.980 | |
| SRR5643662 | five period of Gastrodia elata | 2.030 | |
| SRR5643663 | five period of Gastrodia elata | 1.640 | |
| SRR5643664 | five period of Gastrodia elata | 2.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.89 |
| Juven | Juvenile tuber | 5.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.23 | |
| Mother_Juven | Mother tuber of Juvenile | 8.10 |