Detail information of GWHGAAEX012966/evm.TU.scaffold_48.104
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17231249|ref|NP_487797.1| | 4.00E-16 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| nr | gi|672182066|ref|XP_008811268.1| | 0 | PREDICTED: cellulose synthase-like protein E6 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q651X6|CSLE6_ORYSJ | 0 | Cellulose synthase-like protein E6 |
| trEMBL | tr|M0U1J0|M0U1J0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18830_001} |
| TAIR | AT1G55850 | 0 | cellulose synthase like E1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 2946906 | 2966040 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012966
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03552.13 | Cellulose_synt | 95 | 385 | 3.90E-80 |
| PF03552.13 | Cellulose_synt | 395 | 704 | 5.40E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 144.310 |
| SRR2545915 | Juvenile tuber | 108.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.770 |
| SRR5643514 | five period of Gastrodia elata | 104.330 | |
| SRR5643515 | five period of Gastrodia elata | 150.880 | |
| SRR5643524 | five period of Gastrodia elata | 184.090 | |
| SRR5643525 | five period of Gastrodia elata | 40.450 | |
| SRR5643528 | five period of Gastrodia elata | 117.260 | |
| SRR5643658 | five period of Gastrodia elata | 33.830 | |
| SRR5643659 | five period of Gastrodia elata | 147.870 | |
| SRR5643660 | five period of Gastrodia elata | 174.560 | |
| SRR5643661 | five period of Gastrodia elata | 104.660 | |
| SRR5643662 | five period of Gastrodia elata | 87.910 | |
| SRR5643663 | five period of Gastrodia elata | 46.060 | |
| SRR5643664 | five period of Gastrodia elata | 40.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 176.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 169.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 183.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 190.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 248.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 321.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 221.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 212.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 139.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 209.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 163.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 163.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.06 |
| Juven | Juvenile tuber | 231.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 316.10 | |
| Mother_Juven | Mother tuber of Juvenile | 373.08 |