Gene detail

Detail information of GWHGAAEX012969/evm.TU.scaffold_48.107

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1032	Uncharacterized conserved protein, contains GRAM domain
nr	gi\|743859965\|ref\|XP_010942889.1\|	PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Elaeis guineensis]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|A0A068U8A1\|A0A068U8A1_COFCA	Coffea canephora
TAIR	AT1G03370_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	3108552	3145189	-

Transcript Sequence
>GWHTAAEX012969 AAAAAAAAAAAATCAAGAGCTGCTCACGTCCCGCTGTTTTCAAGCAATTACTAATTACGACGCTGCCACCGACCTCGTACCCAAATATCTCCGGTCTGCCGAGGCGATCGCCTGAGGCTCGAAGAGACGAGGCCGGCGACCTGCTGTTTTCACGCTGAAGAGACAGACGTTCGGTTCGCCGAATCTCAGATTTAGGTTTGTTAGCAGTCTATCTTTCACTTTGCTGCTGCTTATGAACCATCCTAATGAAGCTGTTTGTGCAAGTCATCGAAGCCCGAGGTCTTCCGGGAATGGATTTAAATGGGTTGAGTGATCCCTATGTGAGATTACAACTTGGAAGGCAGCGGGCAAAATCCAAAGTCGTGAAGAAGAGCTTGAGCCCTTTGTGGGATGAAGAATTCGTCTTCAGGGTTGGAGACTTGAGGGAAGAGTTGACTGTCTCAGTTTTAGACGAGGACAAATATTTCAGTGATGATTTTCTCGGTCAAGTTAAACTGTCATTGGTGAAGGTCTTGGATGCAGATAATCTGTCACTGGGATCTGCTTGGTATCAATTGCAGCCCAAGAATAAAAAATCTAAGAACCAGGACTGTGGCGAAATTCGTCTTACATTAGCTTTGTCTCAGAGCGGTTCTTCATATGATGGAACACCTCCTCGAACGTTGTCTGAAGATTTAACATCAAACTCTGACAAATCCTCTGAACTTAAAAGAGAATCACTTTCAGTTCATTCCAATGGGAAACTGGATTCATATGCTGTATCTGAGGTTGATGAAGCTGAGCCTGATATAGAAGAAAAACCGCAGACTCGAGCTTTTTTTGATCGATTGTTTCAAATTTTTACAGGGAAAAATACAGATAATTCTAAGTTTACGAGTAGAGATTTTGATTTTGTTGATGTTATCCAAGAAGAACCACTAAAAATTGAGGGTAATGAACCAGAAGATGATAATGCTTCCAGCCCTACTTTTGATGAATCATTGAAAATTTTGGAGTCGAAAAACCAAGGAAGTGAAACGCCAGAAAATTTAACTGGAGGAGTGATTCTTGATCAGTCTTTTGCAGTTTCCCCTGACGAACTTAATACTGTTATATTTTCTCCAAGTTCAAACTTTTCCAAATCATTAGCAGATATTCAGGGAACTACTGATCTAAATGTTGAACCATGGAGTTTTGAAAATGGCGGGGAAAGCCTGAAAAGGGTGGTCACCTACATTAAAGCTGCAACTAAATTAATTAAAGCAGTGAAAGCAACGGAGGATCAGACTTATCTGAAGGCTGATGGTAGAAATTATTGTGTTTTGTCAAGCGTGAGCACTCCTGATGTTCCATTTGGTAGTTCTTTCAGGTGTGAAGTTTTGTATTGTATAATGCCAGGCCCTCAATTATCATCTGGGGAGAAATCTTCTCGTTTAGTGATATCCTGGCGTATTAATTTTTATCAGAGTACTATGATGAAAGGGATGATTGAAAATGGTGCAAAGCAAGGTTTGAAAGAAAGTTATGCTCAATTTGCTGAACTGCTATCTAAAAATATAAAACCACTTGATCTGAAAGATGTTGGATCCAACAAAGAGCAGGTTTTGGCTTCTTTGCAGACAGAAAGAGAGTCAGATTGCAAATTGGCATGTCGTTTTTTTGGAAATTTCACTGTTATATCTTCTATTTTTGTGGGTTTGTATGTTACTGTGCACGTACTTTTGGCAAACCGCAATTCGATCCAAGGGCTTGAGTTTGTAGGCCTAGATTTACCAGATTCAATTGGAGAAGTTGTGGTTTGTTGCGTATTGGTCCTTCAAGGAGAACGCGTTTTAAATATAATTGGCCGTTTCTTGCAGGCAAGGAAGCAGAGAGGTAGTGATCATGGAATCAAAGCGCAGGGTGATGGATGGCAGCTAACCGTTGCCTTGATTGAGGGAAGTAATTTTGCAGCAGTTGATTCATCCGGTTACTCTGATCCTTATGTAGTTTTTACATGTCACGGAAAAACAAAAACAAGCTCAATCAAGTTCCAAACACTGGATCCTCTTTGGAATGAAATATTTGAATTTGATGCAATGAGTGACCCTCCATCAACCATGGATATTGATGTATATGATTTTGATGGACCTTTTGATGAAGCGGCTTCACTTGGCCATACTGAGGTCAACTTTCTGAAATCTAACTTATCCGAATTGGGAGATGTATGGATTTCTCTGGAGGGAAAAGTAGCTCAGGCGTGCCAATCTAAGCTGCACTTGAGAATCTTTCTTAACAACACCCGAGGCATCCATGTTGTTTCAGATTATTTAACAAAGATGGAGAAAGAAGTTGGTAAAAAGATAAATTTGCGGTCGCCTCAGACAAATTCGACATTCCAGAAGCTATTTGGTCTGCCACCGGAGGAGTTTCTCATCAATGATTTCACCTGTCACTTGAAGCGCAAAATGCCAATACAGGGTCGTTTGTTTCTTTCTCCTAGAATAACCGGATTTTACACCAACCTTTTCGGACACAAAATCAAGTTTTTCTTTCTGTGGGAAGACATTGAGGATATTCAAGTTATTCCCCCTTCCTTAACATCAATGGGCAGTCCTTCTTTATTGATTATTCTTCGCCGTGGTAGAGGTTTAGATGCAAAGCACGGTGCAAAGTCACTAGATCCAGATGGAAGGTTGAAGTTCCATTTCCAGTCATTTGTTTCCTTCAGTGGGGCTAATAGGACAATCATGGCATTGTGGAAGGCAAAATCTCTGAGCCCTGAACAGAAGGTGCGAATAGTTGAAGAAGAATCAGAGGAGAAGGACCTGGAGTCTGAGGAGAGCGGATCTTTCCTGGGCATAGAAGATGCCAAGATGTCCGAGGTTTTCTCCTCTAATGTTACTGTTCCACTGAACTCGCTCATGGGGCTGTTTGGAGGAAACTCTTTAGAGCAGAAGGTGATGGAAAAGGTCGGCTGTGAGGATTATTCTGTCTCAGCCTGGGAATCCGTTCGGCCCGATGTGCACCAAAGACAAATCAACTACAAATTTGACAAGAGCATCTCTCGCTATGGTGGCGAGGTAACCAGCACCCAGCAGAGGTCCCCATTCCATGATAAGAACGGATGGCTCATCGAAGAGGTGATGACACTCCAAGGGGTTCTACTTGGCGACTATTTCACGCTTCATTTGAGGTATCAGATTGATGACCTTCAGTCACAATCCAAAGCGTGCCATGTTCAGGTGTCTCTGGGAATCGCCTGGCTGAAAAGCACCAAGCATCAGAAAAAAATAACCAAGAATGTTATCGCCAACTCATCGGCCCGCCTGAAAGAGATGTTTCGCCTCGTTGAGAAAGAACTCCCTACAGCAAAATAGAAAAAGAAGCCGTCAACTACTAGCGACAAAAGAAAAGCTCTCTAGTCTATATTTTCTTATCCGACCTTGCCTGGACATGATCTAATATTCTTTTGCTGCTGCTGCTGCTGCTGCAAGAGTTCCTTGTTTTTAAGAGAAACCGAGTGCATCAGGAAGCGGCTTCTTTGCTTTCTAATTGTAGGGATATTTAAGTACTTCGCAACCAAATTTGTAGGCTTGGTTGCTTTATATATCACCCCAAAAAGGAATACATACCTGTACAACACGCAAAGCCTGTGTATTTTTATACCTACATTTGTACATTTACAAAACTATCACCTAATTATTCTATTTTATCCATCATATTAAAAAATTGTACAGTGATATAACAATATTTATGTAATAATTGAAGCTTAGGATGTTTGTCATATAAATAATGATTATTTCCAAGGCATGCATGAATTCACACTGAATGCAA

Network for GWHGAAEX012969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	2	102	1.50E-25
PF16016.4	DUF4782	267	415	1.90E-34
PF00168.29	C2	549	650	1.20E-13
PF02893.19	GRAM	703	770	6.10E-12
PF16016.4	DUF4782	867	1008	1.10E-20

Protein Sequence

>GWHPAAEX012969
MKLFVQVIEARGLPGMDLNGLSDPYVRLQLGRQRAKSKVVKKSLSPLWDEEFVFRVGDLREELTVSVLDEDKYFSDDFLGQVKLSLVKVLDADNLSLGSAWYQLQPKNKKSKNQDCGEIRLTLALSQSGSSYDGTPPRTLSEDLTSNSDKSSELKRESLSVHSNGKLDSYAVSEVDEAEPDIEEKPQTRAFFDRLFQIFTGKNTDNSKFTSRDFDFVDVIQEEPLKIEGNEPEDDNASSPTFDESLKILESKNQGSETPENLTGGVILDQSFAVSPDELNTVIFSPSSNFSKSLADIQGTTDLNVEPWSFENGGESLKRVVTYIKAATKLIKAVKATEDQTYLKADGRNYCVLSSVSTPDVPFGSSFRCEVLYCIMPGPQLSSGEKSSRLVISWRINFYQSTMMKGMIENGAKQGLKESYAQFAELLSKNIKPLDLKDVGSNKEQVLASLQTERESDCKLACRFFGNFTVISSIFVGLYVTVHVLLANRNSIQGLEFVGLDLPDSIGEVVVCCVLVLQGERVLNIIGRFLQARKQRGSDHGIKAQGDGWQLTVALIEGSNFAAVDSSGYSDPYVVFTCHGKTKTSSIKFQTLDPLWNEIFEFDAMSDPPSTMDIDVYDFDGPFDEAASLGHTEVNFLKSNLSELGDVWISLEGKVAQACQSKLHLRIFLNNTRGIHVVSDYLTKMEKEVGKKINLRSPQTNSTFQKLFGLPPEEFLINDFTCHLKRKMPIQGRLFLSPRITGFYTNLFGHKIKFFFLWEDIEDIQVIPPSLTSMGSPSLLIILRRGRGLDAKHGAKSLDPDGRLKFHFQSFVSFSGANRTIMALWKAKSLSPEQKVRIVEEESEEKDLESEESGSFLGIEDAKMSEVFSSNVTVPLNSLMGLFGGNSLEQKVMEKVGCEDYSVSAWESVRPDVHQRQINYKFDKSISRYGGEVTSTQQRSPFHDKNGWLIEEVMTLQGVLLGDYFTLHLRYQIDDLQSQSKACHVQVSLGIAWLKSTKHQKKITKNVIANSSARLKEMFRLVEKELPTAK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.630
SRP064423	SRR2545915	Juvenile tuber	25.370
SRP108465	SRR5643513	five period of Gastrodia elata	15.720
	SRR5643514	five period of Gastrodia elata	15.270
	SRR5643515	five period of Gastrodia elata	15.960
	SRR5643524	five period of Gastrodia elata	15.400
	SRR5643525	five period of Gastrodia elata	19.110
	SRR5643528	five period of Gastrodia elata	19.330
	SRR5643658	five period of Gastrodia elata	18.290
	SRR5643659	five period of Gastrodia elata	13.280
	SRR5643660	five period of Gastrodia elata	13.090
	SRR5643661	five period of Gastrodia elata	13.710
	SRR5643662	five period of Gastrodia elata	14.500
	SRR5643663	five period of Gastrodia elata	14.480
	SRR5643664	five period of Gastrodia elata	15.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.650
SRP279888	Gastro	Gastrodia elata tuber	18.53
	Juven	Juvenile tuber	20.94
	Mother_Gastro	Mother tuber of Gastrodia elata	33.36
	Mother_Juven	Mother tuber of Juvenile	35.61