Detail information of GWHGAAEX012972/evm.TU.scaffold_48.111
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219853135|ref|YP_002467567.1| | 2.00E-66 | extradiol ring-cleavage dioxygenase class III protein subunit B [Methanosphaerula palustris E1-9c] |
| nr | gi|743763288|ref|XP_010911822.1| | 2.63E-134 | PREDICTED: extradiol ring-cleavage dioxygenase [Elaeis guineensis] |
| Swissprot | tr|Q70FG7|DODA_BETVU | 3.00E-106 | 4,5-DOPA dioxygenase extradiol |
| trEMBL | tr|M0SGR4|M0SGR4_MUSAM | 2.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21980_001} |
| TAIR | AT4G15090_2 | 2.00E-102 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3252157 | 3273413 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012972
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02900.17 | LigB | 3 | 259 | 3.50E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15777 | DOPA | Betalain biosynthesis | map00965 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006725 | Biological Process | cellular aromatic compound metabolic process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0008198 | Molecular Function | ferrous iron binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016701 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 72.480 |
| SRR2545915 | Juvenile tuber | 28.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 61.530 |
| SRR5643514 | five period of Gastrodia elata | 61.660 | |
| SRR5643515 | five period of Gastrodia elata | 60.330 | |
| SRR5643524 | five period of Gastrodia elata | 73.810 | |
| SRR5643525 | five period of Gastrodia elata | 167.400 | |
| SRR5643528 | five period of Gastrodia elata | 293.980 | |
| SRR5643658 | five period of Gastrodia elata | 234.090 | |
| SRR5643659 | five period of Gastrodia elata | 34.850 | |
| SRR5643660 | five period of Gastrodia elata | 14.480 | |
| SRR5643661 | five period of Gastrodia elata | 38.880 | |
| SRR5643662 | five period of Gastrodia elata | 46.080 | |
| SRR5643663 | five period of Gastrodia elata | 30.850 | |
| SRR5643664 | five period of Gastrodia elata | 40.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 128.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 78.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.28 |
| Juven | Juvenile tuber | 34.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 213.32 | |
| Mother_Juven | Mother tuber of Juvenile | 184.77 |