Detail information of GWHGAAEX012973/evm.TU.scaffold_48.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219853135|ref|YP_002467567.1| | 2.00E-65 | extradiol ring-cleavage dioxygenase class III protein subunit B [Methanosphaerula palustris E1-9c] |
| nr | gi|743763288|ref|XP_010911822.1| | 4.58E-119 | PREDICTED: extradiol ring-cleavage dioxygenase [Elaeis guineensis] |
| Swissprot | tr|Q70FG7|DODA_BETVU | 2.00E-94 | 4,5-DOPA dioxygenase extradiol |
| trEMBL | tr|M8ASD7|M8ASD7_AEGTA | 1.00E-116 | 4,5-DOPA dioxygenase extradiol-like protein {ECO:0000313|EMBL:EMT07407.1} |
| TAIR | AT4G15090_2 | 3.00E-89 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3307494 | 3311897 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012973
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02900.17 | LigB | 10 | 248 | 7.60E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15777 | DOPA | Betalain biosynthesis | map00965 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006725 | Biological Process | cellular aromatic compound metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016701 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0008198 | Molecular Function | ferrous iron binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.430 |
| SRR2545915 | Juvenile tuber | 1.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.340 |
| SRR5643514 | five period of Gastrodia elata | 1.680 | |
| SRR5643515 | five period of Gastrodia elata | 3.930 | |
| SRR5643524 | five period of Gastrodia elata | 2.690 | |
| SRR5643525 | five period of Gastrodia elata | 0.280 | |
| SRR5643528 | five period of Gastrodia elata | 0.890 | |
| SRR5643658 | five period of Gastrodia elata | 0.500 | |
| SRR5643659 | five period of Gastrodia elata | 1.070 | |
| SRR5643660 | five period of Gastrodia elata | 1.980 | |
| SRR5643661 | five period of Gastrodia elata | 1.600 | |
| SRR5643662 | five period of Gastrodia elata | 0.730 | |
| SRR5643663 | five period of Gastrodia elata | 0.690 | |
| SRR5643664 | five period of Gastrodia elata | 0.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.69 |
| Juven | Juvenile tuber | 4.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.37 | |
| Mother_Juven | Mother tuber of Juvenile | 30.83 |